RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SASH1O94885 1247 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 PTPN12Q05209 780 aaKnown RBP12.63□□□□□ -0.39
SS18-207ENST00000577636 FLIIQ13045 1269 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
SS18-207ENST00000577636 ZBTB40Q9NUA8 1239 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 FZD1Q9UP38 647 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 PDE4DIPQ5VU43 2346 aa12.63□□□□□ -0.39
SS18-207ENST00000577636 SREBF2Q12772 1141 aa12.62□□□□□ -0.39
SS18-207ENST00000577636 ANGEL1Q9UNK9 670 aaKnown RBP12.62□□□□□ -0.39
SS18-207ENST00000577636 MINPP1Q9UNW1 487 aa12.62□□□□□ -0.39
SS18-207ENST00000577636 ZBTB7BO15156 539 aaPredicted RBP12.61□□□□□ -0.39
SS18-207ENST00000577636 DDX58O95786 925 aaKnown RBP12.61□□□□□ -0.39
SS18-207ENST00000577636 HDAC1Q13547 482 aaPredicted RBP12.61□□□□□ -0.39
SS18-207ENST00000577636 DACT2Q5SW24 774 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 TTLL5Q6EMB2 1281 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 SLC4A10Q6U841 1118 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 KIAA0825Q8IV33 1275 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 METTL22Q9BUU2 404 aaPredicted RBP12.61□□□□□ -0.39
SS18-207ENST00000577636 TRIM17Q9Y577 477 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 PCDHB15Q9Y5E8 787 aa12.61□□□□□ -0.39
SS18-207ENST00000577636 CTSWP56202 376 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 STRIP1Q5VSL9 837 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 TXNRD3Q86VQ6 643 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 SLC10A4Q96EP9 437 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 COA1Q9GZY4 146 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 GREM2Q9H772 168 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 BSDC1Q9NW68 430 aaPredicted RBP12.6□□□□□ -0.39
SS18-207ENST00000577636 MAP3K2Q9Y2U5 619 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 PAPPA2Q9BXP8 1791 aa12.6□□□□□ -0.39
SS18-207ENST00000577636 IGHDP01880 384 aa12.59□□□□□ -0.39
SS18-207ENST00000577636 GTF2IP78347 998 aa12.59□□□□□ -0.39
SS18-207ENST00000577636 SPRYD7Q5W111 196 aa12.59□□□□□ -0.39
SS18-207ENST00000577636 TTLL11Q8NHH1 800 aa12.59□□□□□ -0.39
SS18-207ENST00000577636 TSHZ2Q9NRE2 1034 aa12.59□□□□□ -0.39
SS18-207ENST00000577636 GNAI3P08754 354 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 IGHMBP2P38935 993 aaKnown RBP12.58□□□□□ -0.4
SS18-207ENST00000577636 G2E3Q7L622 706 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 APOBEC3FQ8IUX4 373 aaKnown RBP12.58□□□□□ -0.4
SS18-207ENST00000577636 GCC1Q96CN9 775 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
SS18-207ENST00000577636 HDAC5Q9UQL6 1122 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 LEMD3Q9Y2U8 911 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 MYO3BQ8WXR4 1341 aa12.58□□□□□ -0.4
SS18-207ENST00000577636 MED23Q9ULK4 1368 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 POTEFA5A3E0 1075 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 F8W031 263 aaPredicted RBP12.57□□□□□ -0.4
SS18-207ENST00000577636 HMMRO75330 724 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 ALDH1A1P00352 501 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 KLRK1P26718 216 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 KCNJ4P48050 445 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 NEXNQ0ZGT2 675 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 CWF19L2Q2TBE0 894 aaKnown RBP12.57□□□□□ -0.4
SS18-207ENST00000577636 NOM1Q5C9Z4 860 aaKnown RBP12.57□□□□□ -0.4
SS18-207ENST00000577636 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 MPHOSPH8Q99549 860 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 DEFB129Q9H1M3 183 aa12.57□□□□□ -0.4
SS18-207ENST00000577636 ZNF609O15014 1411 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 MANSC4A6NHS7 340 aaPredicted RBP12.56□□□□□ -0.4
SS18-207ENST00000577636 IGKV5-2P06315 115 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 DLGAP5Q15398 846 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 LDLRAD1Q5T700 205 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 KSR2Q6VAB6 950 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 OTOP1Q7RTM1 612 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 IFNL1Q8IU54 200 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 RPAP2Q8IXW5 612 aaPredicted RBP12.56□□□□□ -0.4
SS18-207ENST00000577636 CLMNQ96JQ2 1002 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 SRCIN1Q9C0H9 1055 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 ZNF804BA4D1E1 1349 aa12.56□□□□□ -0.4
SS18-207ENST00000577636 CLRN2A0PK11 232 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 F6X3S4 739 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 PPP1R12BO60237 982 aaPredicted RBP12.55□□□□□ -0.4
SS18-207ENST00000577636 GNAI2P04899 355 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 ITGA6P23229 1130 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 RGS3P49796 1198 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 INHBEP58166 350 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 HABP4Q5JVS0 413 aaKnown RBP12.55□□□□□ -0.4
SS18-207ENST00000577636 UBE3BQ7Z3V4 1068 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 CD99L2Q8TCZ2 262 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 DNAAF4Q8WXU2 420 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 VEZTQ9HBM0 779 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 PCDHAC2Q9Y5I4 1007 aa12.55□□□□□ -0.4
SS18-207ENST00000577636 SNAP23O00161 211 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 IGF2BP3O00425 579 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-207ENST00000577636 EN2P19622 333 aaPredicted RBP12.54□□□□□ -0.4
SS18-207ENST00000577636 RBM5P52756 815 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-207ENST00000577636 MAPK8IP2Q13387 824 aaPredicted RBP12.54□□□□□ -0.4
SS18-207ENST00000577636 HELBQ8NG08 1087 aaPredicted RBP12.54□□□□□ -0.4
SS18-207ENST00000577636 WNK4Q96J92 1243 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 CFHR5Q9BXR6 569 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 ANKRD2Q9GZV1 360 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 CD209Q9NNX6 404 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
SS18-207ENST00000577636 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 TAF5LO75529 589 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 UBTFL1P0CB47 393 aaPredicted RBP12.53□□□□□ -0.4
SS18-207ENST00000577636 MMP14P50281 582 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 NBPF12Q5TAG4 269 aaPredicted RBP12.53□□□□□ -0.4
SS18-207ENST00000577636 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
SS18-207ENST00000577636 SMC5Q8IY18 1101 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 158.4 ms