RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PDE8BO95263 885 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 PTMAP06454 111 aaKnown RBP11.86□□□□□ -0.51
VPS53-220ENST00000576149 ADD1P35611 737 aaKnown RBP11.86□□□□□ -0.51
VPS53-220ENST00000576149 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS53-220ENST00000576149 NCOA5Q9HCD5 579 aaKnown RBP11.86□□□□□ -0.51
VPS53-220ENST00000576149 TBC1D2BQ9UPU7 963 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 UBN2Q6ZU65 1347 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 COL16A1Q07092 1604 aaPredicted RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 GPAA1O43292 621 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 HAND2P61296 217 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 ZSCAN25Q6NSZ9 544 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 RBM43Q6ZSC3 357 aaKnown RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 ADD2P35612 726 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 TTF1Q15361 905 aaPredicted RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 CAMK4Q16566 473 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 MB21D2Q8IYB1 491 aaPredicted RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 TNMDQ9H2S6 317 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 CLSTN2Q9H4D0 955 aa11.85□□□□□ -0.51
VPS53-220ENST00000576149 NAP1L2Q9ULW6 460 aaPredicted RBP11.85□□□□□ -0.51
VPS53-220ENST00000576149 AK7Q96M32 723 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 RCOR1Q9UKL0 485 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 COL22A1Q8NFW1 1626 aaPredicted RBP11.84□□□□□ -0.51
VPS53-220ENST00000576149 NUP98P52948 1817 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 MYH3P11055 1940 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 AKAP11Q9UKA4 1901 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 ATRNO75882 1429 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 NR1I2O75469 434 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 EIF5P55010 431 aaKnown RBP11.84□□□□□ -0.51
VPS53-220ENST00000576149 TYRO3Q06418 890 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 ATL3Q6DD88 541 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 NCOA7Q8NI08 942 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 FAM200AQ8TCP9 573 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 BICD2Q8TD16 824 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 GPHNQ9NQX3 736 aaPredicted RBP11.84□□□□□ -0.51
VPS53-220ENST00000576149 MRVI1Q9Y6F6 885 aa11.84□□□□□ -0.51
VPS53-220ENST00000576149 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS53-220ENST00000576149 CARMIL3Q8ND23 1372 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 ZNF213O14771 459 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 PRC1O43663 620 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 FDPSP14324 419 aaKnown RBP11.83□□□□□ -0.52
VPS53-220ENST00000576149 ARID4AP29374 1257 aaPredicted RBP11.83□□□□□ -0.52
VPS53-220ENST00000576149 UBE3CQ15386 1083 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 SLC9C2Q5TAH2 1124 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 CDCA7Q9BWT1 371 aaPredicted RBP11.83□□□□□ -0.52
VPS53-220ENST00000576149 PIH1D3Q9NQM4 214 aaKnown RBP11.83□□□□□ -0.52
VPS53-220ENST00000576149 WDR19Q8NEZ3 1342 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 LRP5O75197 1615 aa11.83□□□□□ -0.52
VPS53-220ENST00000576149 AHDC1Q5TGY3 1603 aaPredicted RBP11.83□□□□□ -0.52
VPS53-220ENST00000576149 UQCRFS1P1P0C7P4 283 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 FGFR2P21802 821 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 ANTXR2P58335 489 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 PUM3Q15397 648 aaKnown RBP11.82□□□□□ -0.52
VPS53-220ENST00000576149 INTS5Q6P9B9 1019 aaKnown RBP11.82□□□□□ -0.52
VPS53-220ENST00000576149 LPIN2Q92539 896 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 MROH5Q6ZUA9 1318 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 ROBO1Q9Y6N7 1651 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 WNK3Q9BYP7 1800 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 SLIT2O94813 1529 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 AP5Z1O43299 807 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 PHKA1P46020 1223 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 FOSBP53539 338 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 RALYLQ86SE5 291 aaKnown RBP11.82□□□□□ -0.52
VPS53-220ENST00000576149 CKAP2LQ8IYA6 745 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 MYH7P12883 1935 aa11.82□□□□□ -0.52
VPS53-220ENST00000576149 DHX16O60231 1041 aaKnown RBP11.81□□□□□ -0.52
VPS53-220ENST00000576149 SUSD4Q5VX71 490 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 ILDR1Q86SU0 546 aaPredicted RBP11.81□□□□□ -0.52
VPS53-220ENST00000576149 ZNF396Q96N95 335 aaPredicted RBP11.81□□□□□ -0.52
VPS53-220ENST00000576149 USP28Q96RU2 1077 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 HPS5Q9UPZ3 1129 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 DOT1LQ8TEK3 1739 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 KLF18A0A0U1RQI7 1052 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 PPFIA3O75145 1194 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 IDH1O75874 414 aaKnown RBP11.81□□□□□ -0.52
VPS53-220ENST00000576149 CEBPZQ03701 1054 aaKnown RBP11.81□□□□□ -0.52
VPS53-220ENST00000576149 NBPF3Q9H094 633 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 CCDC87Q9NVE4 849 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 ZNF532Q9HCE3 1301 aa11.81□□□□□ -0.52
VPS53-220ENST00000576149 TCRBV5S4A2TA0A5A2 114 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 PDE6AP16499 860 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 TERF1P54274 439 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 GUCY1B3Q02153 619 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 KIAA2012Q0VF49 1180 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 FTOQ9C0B1 505 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS53-220ENST00000576149 THRAP3Q9Y2W1 955 aaKnown RBP11.8□□□□□ -0.52
VPS53-220ENST00000576149 SPATA31A1Q5TZJ5 1347 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 GOLGA8BA8MQT2 603 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 TPM2P07951 284 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 DDB1Q16531 1140 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 ANO6Q4KMQ2 910 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 DDX60Q8IY21 1712 aaKnown RBP11.8□□□□□ -0.52
VPS53-220ENST00000576149 HELBQ8NG08 1087 aaPredicted RBP11.8□□□□□ -0.52
VPS53-220ENST00000576149 WWC3Q9ULE0 1092 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 MYH15Q9Y2K3 1946 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 KAT6BQ8WYB5 2073 aa11.8□□□□□ -0.52
VPS53-220ENST00000576149 SLC5A1P13866 664 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 ATP6V1AP38606 617 aa11.79□□□□□ -0.52
VPS53-220ENST00000576149 CRKLP46109 303 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms