RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DHX8Q14562 1220 aaKnown RBP8.64□□□□□ -1.03
VPS53-217ENST00000575100 ARHGEF25Q86VW2 580 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 PHTF2Q8N3S3 785 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 HLA-CQ95604 372 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 TNS2Q63HR2 1409 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 LTN1O94822 1766 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 COL3A1P02461 1466 aaPredicted RBP8.64□□□□□ -1.03
VPS53-217ENST00000575100 LIG1P18858 919 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 GNALP38405 381 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 ENOX2Q16206 610 aaKnown RBP8.64□□□□□ -1.03
VPS53-217ENST00000575100 TOM1L2Q6ZVM7 507 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 FERMT3Q86UX7 667 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 MARCH10Q8NA82 808 aaPredicted RBP8.64□□□□□ -1.03
VPS53-217ENST00000575100 KCNH5Q8NCM2 988 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 CARD10Q9BWT7 1032 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 JADE2Q9NQC1 790 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 SWAP70Q9UH65 585 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 FBXO9Q9UK97 447 aaPredicted RBP8.64□□□□□ -1.03
VPS53-217ENST00000575100 WWC3Q9ULE0 1092 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 KIAA1024Q9UPX6 916 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 AXIN2Q9Y2T1 843 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 COL24A1Q17RW2 1714 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 PRSS12P56730 875 aa8.63□□□□□ -1.03
VPS53-217ENST00000575100 PDCD7Q8N8D1 485 aaKnown RBP8.63□□□□□ -1.03
VPS53-217ENST00000575100 SMG6Q86US8 1419 aaKnown RBP8.63□□□□□ -1.03
VPS53-217ENST00000575100 BTAF1O14981 1849 aa8.63□□□□□ -1.03
VPS53-217ENST00000575100 ATP1A2P50993 1020 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 C6orf132Q5T0Z8 1188 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 WDR78Q5VTH9 848 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 PTF1AQ7RTS3 328 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 USP48Q86UV5 1035 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 ZNF512BQ96KM6 892 aaPredicted RBP8.62□□□□□ -1.03
VPS53-217ENST00000575100 APBA2Q99767 749 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 C12orf49Q9H741 205 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 MAP2P11137 1827 aaKnown RBP8.62□□□□□ -1.03
VPS53-217ENST00000575100 MAP3K19Q56UN5 1328 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 ZBTB7BO15156 539 aaPredicted RBP8.62□□□□□ -1.03
VPS53-217ENST00000575100 SEC13P55735 322 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 TMEM92Q6UXU6 159 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 TRIM50Q86XT4 487 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 CACTIN-AS1Q8N1I8 211 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 HELQQ8TDG4 1101 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 MKNK1Q9BUB5 465 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 SLKQ9H2G2 1235 aaPredicted RBP8.62□□□□□ -1.03
VPS53-217ENST00000575100 ADAMTS8Q9UP79 889 aa8.62□□□□□ -1.03
VPS53-217ENST00000575100 FAM208AQ9UK61 1670 aaKnown RBP8.61□□□□□ -1.03
VPS53-217ENST00000575100 NDUFB5O43674 189 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 CD44P16070 742 aaKnown RBP8.61□□□□□ -1.03
VPS53-217ENST00000575100 PLCB3Q01970 1234 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 MYBPC2Q14324 1141 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 EML3Q32P44 896 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 TSR2Q969E8 191 aaKnown RBP8.61□□□□□ -1.03
VPS53-217ENST00000575100 CRELD1Q96HD1 420 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 CITED4Q96RK1 184 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 SETDB2Q96T68 719 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 CEP126Q9P2H0 1117 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 CDC45O75419 566 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 CTSHP09668 335 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 RBM10P98175 930 aaKnown RBP8.61□□□□□ -1.03
VPS53-217ENST00000575100 TXNRD1Q16881 649 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 PCGF5Q86SE9 256 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 RAVER1Q8IY67 606 aaKnown RBP8.61□□□□□ -1.03
VPS53-217ENST00000575100 SFMBT1Q9UHJ3 866 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 BOLA1Q9Y3E2 137 aa8.61□□□□□ -1.03
VPS53-217ENST00000575100 FAM13AO94988 1023 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 LDHAP00338 332 aaKnown RBP8.6□□□□□ -1.03
VPS53-217ENST00000575100 GCGRP47871 477 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 PTPN12Q05209 780 aaKnown RBP8.6□□□□□ -1.03
VPS53-217ENST00000575100 TRAF7Q6Q0C0 670 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 KIAA0907Q7Z7F0 614 aaPredicted RBP8.6□□□□□ -1.03
VPS53-217ENST00000575100 CDCA7LQ96GN5 454 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 SRPK1Q96SB4 655 aaKnown RBP8.6□□□□□ -1.03
VPS53-217ENST00000575100 PDGFDQ9GZP0 370 aaPredicted RBP8.6□□□□□ -1.03
VPS53-217ENST00000575100 TMEM134Q9H6X4 195 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 STK32BQ9NY57 414 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 MAP3K5Q99683 1374 aa8.6□□□□□ -1.03
VPS53-217ENST00000575100 CFAP69A5D8W1 941 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 PTCD1O75127 700 aaKnown RBP8.59□□□□□ -1.03
VPS53-217ENST00000575100 POTEIP0CG38 1075 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 SLC15A2Q16348 729 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 ARSHQ5FYA8 562 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 CCDC85AQ96PX6 553 aaPredicted RBP8.59□□□□□ -1.03
VPS53-217ENST00000575100 FANCLQ9NW38 375 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 INSRP06213 1382 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 TUBGCP6Q96RT7 1819 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 IFRD1O00458 451 aaPredicted RBP8.59□□□□□ -1.03
VPS53-217ENST00000575100 FKBP5Q13451 457 aaPredicted RBP8.59□□□□□ -1.03
VPS53-217ENST00000575100 DMRTB1Q96MA1 342 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 FAM198AQ9UFP1 575 aa8.59□□□□□ -1.03
VPS53-217ENST00000575100 NR1I2O75469 434 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 ZBTB7AO95365 584 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 FGAP02671 866 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 DNAJB2P25686 324 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 WEE1P30291 646 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 IL13P35225 146 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 HNRNPUQ00839 825 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS53-217ENST00000575100 EIF4A2Q14240 407 aaKnown RBP8.58□□□□□ -1.04
VPS53-217ENST00000575100 MAP7D1Q3KQU3 841 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 ERICH6BQ5W0A0 696 aa8.58□□□□□ -1.04
VPS53-217ENST00000575100 SAMD3Q8N6K7 520 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms