RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 RNF225M0QZC1 329 aaPredicted RBP8.25□□□□□ -1.09
NUP88-208ENST00000574087 DEAF1O75398 565 aaPredicted RBP8.25□□□□□ -1.09
NUP88-208ENST00000574087 FCGRTP55899 365 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 CABP4P57796 275 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 SETDB1Q15047 1291 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 TXNDC11Q6PKC3 985 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 FBXO11Q86XK2 927 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 C3orf58Q8NDZ4 430 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 FOXD4L4Q8WXT5 416 aaPredicted RBP8.25□□□□□ -1.09
NUP88-208ENST00000574087 ZNF576Q9H609 170 aa8.25□□□□□ -1.09
NUP88-208ENST00000574087 SRA1Q9HD15 236 aaKnown RBP8.25□□□□□ -1.09
NUP88-208ENST00000574087 FAM229AH3BQW9 127 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 XRCC5P13010 732 aaKnown RBP8.24□□□□□ -1.09
NUP88-208ENST00000574087 CDC25BP30305 580 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 GSK3AP49840 483 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 RAC1P63000 192 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 XPCQ01831 940 aaPredicted RBP8.24□□□□□ -1.09
NUP88-208ENST00000574087 KCNMA1Q12791 1236 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 TRIM28Q13263 835 aaKnown RBP8.24□□□□□ -1.09
NUP88-208ENST00000574087 MAP4K3Q8IVH8 894 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 WNT8BQ93098 351 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 FAM161BQ96MY7 647 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 CLEC4MQ9H2X3 399 aaPredicted RBP8.24□□□□□ -1.09
NUP88-208ENST00000574087 FAM8A1Q9UBU6 413 aa8.24□□□□□ -1.09
NUP88-208ENST00000574087 SOX1O00570 391 aaPredicted RBP8.23□□□□□ -1.09
NUP88-208ENST00000574087 FSCN2O14926 492 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 ESRRAP11474 423 aaPredicted RBP8.23□□□□□ -1.09
NUP88-208ENST00000574087 EIF4BP23588 611 aaKnown RBP8.23□□□□□ -1.09
NUP88-208ENST00000574087 GSTT1P30711 240 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 PSMD2Q13200 908 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 IKBKEQ14164 716 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 PRRT3Q5FWE3 981 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 RPS26P11Q5JNZ5 115 aaPredicted RBP8.23□□□□□ -1.09
NUP88-208ENST00000574087 DTHD1Q6ZMT9 781 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 ALYREFQ86V81 257 aaKnown RBP8.23□□□□□ -1.09
NUP88-208ENST00000574087 GALNT11Q8NCW6 608 aa8.23□□□□□ -1.09
NUP88-208ENST00000574087 SPATA31C1P0DKV0 1188 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 PIP4K2BP78356 416 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 PCDH1Q08174 1060 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 ZNF423Q2M1K9 1284 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 HGSNATQ68CP4 663 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 FAM117BQ6P1L5 589 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 SOX17Q9H6I2 414 aaPredicted RBP8.22□□□□□ -1.09
NUP88-208ENST00000574087 ZFYVE1Q9HBF4 777 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 OSGEPQ9NPF4 335 aa8.22□□□□□ -1.09
NUP88-208ENST00000574087 DLL1O00548 723 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 USP17L7P0C7H9 530 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 ELNP15502 786 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 KLHL23Q8NBE8 558 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 ANKRD24Q8TF21 1146 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 SEC31BQ9NQW1 1179 aa8.21□□□□□ -1.1
NUP88-208ENST00000574087 SORBS3O60504 671 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 B3GALT4O96024 378 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 FAAP100Q0VG06 881 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 MRPL58Q14197 206 aaKnown RBP8.2□□□□□ -1.1
NUP88-208ENST00000574087 KLHDC7BQ96G42 594 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 CARD10Q9BWT7 1032 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 AKAP2Q9Y2D5 859 aa8.2□□□□□ -1.1
NUP88-208ENST00000574087 CTSHP09668 335 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 ARL4DP49703 201 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 C19orf57Q0VDD7 668 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 GRIK4Q16099 956 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 SLC7A3Q8WY07 619 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 DCAF5Q96JK2 942 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 PPM1HQ9ULR3 514 aa8.19□□□□□ -1.1
NUP88-208ENST00000574087 SELPP16109 830 aa8.18□□□□□ -1.1
NUP88-208ENST00000574087 CD68P34810 354 aaPredicted RBP8.18□□□□□ -1.1
NUP88-208ENST00000574087 RASSF7Q02833 373 aa8.18□□□□□ -1.1
NUP88-208ENST00000574087 SUZ12Q15022 739 aaKnown RBP8.18□□□□□ -1.1
NUP88-208ENST00000574087 FOXD4L6Q3SYB3 417 aaPredicted RBP8.18□□□□□ -1.1
NUP88-208ENST00000574087 FOXD4L3Q6VB84 417 aaPredicted RBP8.18□□□□□ -1.1
NUP88-208ENST00000574087 DCAF11Q8TEB1 546 aa8.18□□□□□ -1.1
NUP88-208ENST00000574087 MRS2Q9HD23 443 aa8.18□□□□□ -1.1
NUP88-208ENST00000574087 KCNK4Q9NYG8 393 aa8.18□□□□□ -1.1
NUP88-208ENST00000574087 KRBA1A5PL33 1030 aa8.17□□□□□ -1.1
NUP88-208ENST00000574087 ADAM11O75078 769 aa8.17□□□□□ -1.1
NUP88-208ENST00000574087 IGF2-ASQ6U949 168 aa8.17□□□□□ -1.1
NUP88-208ENST00000574087 DDX3YO15523 660 aaKnown RBP8.16□□□□□ -1.1
NUP88-208ENST00000574087 ITGAEP38570 1179 aa8.16□□□□□ -1.1
NUP88-208ENST00000574087 SHISA2Q6UWI4 295 aa8.16□□□□□ -1.1
NUP88-208ENST00000574087 LENG1Q96BZ8 264 aaPredicted RBP8.16□□□□□ -1.1
NUP88-208ENST00000574087 NRSN2Q9GZP1 204 aa8.16□□□□□ -1.1
NUP88-208ENST00000574087 VTI1BQ9UEU0 232 aa8.16□□□□□ -1.1
NUP88-208ENST00000574087 USP31Q70CQ4 1352 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 UNCXA6NJT0 531 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 EIF4EBP3O60516 100 aaPredicted RBP8.15□□□□□ -1.1
NUP88-208ENST00000574087 ZNF157P51786 506 aaPredicted RBP8.15□□□□□ -1.1
NUP88-208ENST00000574087 GSTM4Q03013 218 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 CRELD1Q96HD1 420 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 NECAB3Q96P71 396 aaPredicted RBP8.15□□□□□ -1.1
NUP88-208ENST00000574087 NACC1Q96RE7 527 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 TMEM39AQ9NV64 488 aa8.15□□□□□ -1.1
NUP88-208ENST00000574087 C9orf172C9J069 976 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 ENC1O14682 589 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 GDF11O95390 407 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 MEI1Q5TIA1 1274 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 TPTE2Q6XPS3 522 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 TRIM56Q9BRZ2 755 aaKnown RBP8.14□□□□□ -1.11
NUP88-208ENST00000574087 CEP44Q9C0F1 390 aa8.14□□□□□ -1.11
NUP88-208ENST00000574087 BCL11AQ9H165 835 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms