RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TDRD7Q8NHU6 1098 aaKnown RBP16.5■□□□□ 0.23
CCDC40-209ENST00000573474 GPR101Q96P66 508 aaPredicted RBP16.5■□□□□ 0.23
CCDC40-209ENST00000573474 EYA3Q99504 573 aa16.5■□□□□ 0.23
CCDC40-209ENST00000573474 ANO2Q9NQ90 1003 aa16.5■□□□□ 0.23
CCDC40-209ENST00000573474 IDH1O75874 414 aaKnown RBP16.49■□□□□ 0.23
CCDC40-209ENST00000573474 MAP3K12Q12852 859 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 LTBP1Q14766 1721 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 RTFDC1Q9BY42 306 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-209ENST00000573474 ZC3H12CQ9C0D7 883 aaKnown RBP16.49■□□□□ 0.23
CCDC40-209ENST00000573474 IL25Q9H293 177 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 SPON1Q9HCB6 807 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 CD209Q9NNX6 404 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 PIM2Q9P1W9 311 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 ZNF219Q9P2Y4 722 aaPredicted RBP16.49■□□□□ 0.23
CCDC40-209ENST00000573474 SLX4Q8IY92 1834 aa16.49■□□□□ 0.23
CCDC40-209ENST00000573474 IL1R1P14778 569 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 UBE3CQ15386 1083 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 SLC9C2Q5TAH2 1124 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 COA1Q9GZY4 146 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 LSG1Q9H089 658 aaKnown RBP16.48■□□□□ 0.23
CCDC40-209ENST00000573474 LRP2BPQ9P2M1 347 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 PPP1R1BQ9UD71 204 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-209ENST00000573474 DLEC1Q9Y238 1755 aa16.48■□□□□ 0.23
CCDC40-209ENST00000573474 C21orf2O43822 256 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 CHGBP05060 677 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 ADD2P35612 726 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 ANP32AP39687 249 aaKnown RBP16.47■□□□□ 0.23
CCDC40-209ENST00000573474 RTKN2Q8IZC4 609 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 SUPT20HQ8NEM7 779 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 WDR66Q8TBY9 1149 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 APPBP2Q92624 585 aa16.47■□□□□ 0.23
CCDC40-209ENST00000573474 COL1A1P02452 1464 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-209ENST00000573474 RIMBP2O15034 1052 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 IGSF3O75054 1194 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 PDE6AP16499 860 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 MCCP23508 829 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 CHAF1AQ13111 956 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-209ENST00000573474 CCDC93Q567U6 631 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 SOGA3Q5TF21 947 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 ZGPATQ8N5A5 531 aaKnown RBP16.46■□□□□ 0.23
CCDC40-209ENST00000573474 ABCF2Q9UG63 623 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 DUOX1Q9NRD9 1551 aa16.46■□□□□ 0.23
CCDC40-209ENST00000573474 SALL1Q9NSC2 1324 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 SLFNL1Q499Z3 407 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 DALRD3Q5D0E6 543 aaKnown RBP16.45■□□□□ 0.22
CCDC40-209ENST00000573474 SPTY2D1Q68D10 685 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-209ENST00000573474 TMED8Q6PL24 325 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-209ENST00000573474 ZNF589Q86UQ0 364 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-209ENST00000573474 KLHL34Q8N239 644 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 OSBP2Q969R2 916 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 SEC62Q99442 399 aaKnown RBP16.45■□□□□ 0.22
CCDC40-209ENST00000573474 RAI14Q9P0K7 980 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 CACNA1SQ13698 1873 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 CCDC171Q6TFL3 1326 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 ZNF532Q9HCE3 1301 aa16.45■□□□□ 0.22
CCDC40-209ENST00000573474 TCRBV5S4A2TA0A5A2 114 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 G3V3G9 751 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 PTH1RQ03431 593 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 DCAF8Q5TAQ9 597 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 ERICH6Q7L0X2 663 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 MAGEB6Q8N7X4 407 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 SNED1Q8TER0 1413 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 MAST3O60307 1309 aa16.44■□□□□ 0.22
CCDC40-209ENST00000573474 KIAA1551Q9HCM1 1747 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 M0R2C6 588 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 CCDC129Q6ZRS4 1044 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 MAP4K1Q92918 833 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 PSMD1Q99460 953 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 FAM205AQ6ZU69 1335 aa16.43■□□□□ 0.22
CCDC40-209ENST00000573474 HSPA4P34932 840 aa16.42■□□□□ 0.22
CCDC40-209ENST00000573474 DOK7Q18PE1 504 aa16.42■□□□□ 0.22
CCDC40-209ENST00000573474 TBC1D22AQ8WUA7 517 aa16.42■□□□□ 0.22
CCDC40-209ENST00000573474 PUS7LQ9H0K6 701 aaKnown RBP16.42■□□□□ 0.22
CCDC40-209ENST00000573474 DOCK2Q92608 1830 aa16.42■□□□□ 0.22
CCDC40-209ENST00000573474 CYP7A1P22680 504 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 ANAPC15P60006 121 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 KIAA2012Q0VF49 1180 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 NAA16Q6N069 864 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-209ENST00000573474 PODNQ7Z5L7 613 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 DSCC1Q9BVC3 393 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 VPS33BQ9H267 617 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 JAG2Q9Y219 1238 aa16.41■□□□□ 0.22
CCDC40-209ENST00000573474 GPAA1O43292 621 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 LDHBP07195 334 aaKnown RBP16.4■□□□□ 0.22
CCDC40-209ENST00000573474 MECOMQ03112 1051 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 AIDAQ96BJ3 306 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 NSUN4Q96CB9 384 aaKnown RBP16.4■□□□□ 0.22
CCDC40-209ENST00000573474 DDRGK1Q96HY6 314 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 KIF2CQ99661 725 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 RBM8AQ9Y5S9 174 aaKnown RBP16.4■□□□□ 0.22
CCDC40-209ENST00000573474 U3KPZ7 1027 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-209ENST00000573474 MYH7P12883 1935 aa16.4■□□□□ 0.22
CCDC40-209ENST00000573474 MYH13Q9UKX3 1938 aa16.39■□□□□ 0.21
CCDC40-209ENST00000573474 HSPD1P10809 573 aaKnown RBP16.39■□□□□ 0.21
CCDC40-209ENST00000573474 PRDX5P30044 214 aa16.39■□□□□ 0.21
CCDC40-209ENST00000573474 GTF2IP78347 998 aa16.39■□□□□ 0.21
CCDC40-209ENST00000573474 GSTO1P78417 241 aa16.39■□□□□ 0.21
CCDC40-209ENST00000573474 NECTIN1Q15223 517 aa16.39■□□□□ 0.21
CCDC40-209ENST00000573474 AOC3Q16853 763 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms