RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 FAM227BQ96M60 508 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 AATFQ9NY61 560 aaKnown RBP eCLIP11.87□□□□□ -0.51
SMG6-213ENST00000573166 RGPD8O14715 1765 aaPredicted RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 GOLGA8BA8MQT2 603 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 C21orf2O43822 256 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 TSPY3P0CV98 308 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 TSPY8P0CW00 308 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 MCM5P33992 734 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 HELLSQ9NRZ9 838 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 BSDC1Q9NW68 430 aaPredicted RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 TTF2Q9UNY4 1162 aaKnown RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 CDHR2Q9BYE9 1310 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 BCL9O00512 1426 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 KIAA0825Q8IV33 1275 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 CELF1Q92879 486 aaKnown RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 LRRC2Q9BYS8 371 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 PIM2Q9P1W9 311 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 GPAA1O43292 621 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 MICU3Q86XE3 530 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 ZNF34Q8IZ26 560 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 KRT23Q9C075 422 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 TLR7Q9NYK1 1049 aaKnown RBP11.87□□□□□ -0.51
SMG6-213ENST00000573166 LIMCH1Q9UPQ0 1083 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 RAD50Q92878 1312 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 ZNF532Q9HCE3 1301 aa11.87□□□□□ -0.51
SMG6-213ENST00000573166 CCT2P78371 535 aaKnown RBP11.86□□□□□ -0.51
SMG6-213ENST00000573166 CCDC93Q567U6 631 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 BRIP1Q9BX63 1249 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 SPON1Q9HCB6 807 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 GPR108Q9NPR9 543 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 SNAP23O00161 211 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 KAT14Q9H8E8 782 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 CNNM2Q9H8M5 875 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 GOLGA8AA7E2F4 631 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 SASH1O94885 1247 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 DLGAP5Q15398 846 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 CC2D2BQ6DHV5 1058 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 TTC6Q86TZ1 520 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 RAB11FIP4Q86YS3 637 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 BRF1Q92994 677 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 DBNDD1Q9H9R9 158 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 NWD1Q149M9 1564 aa11.86□□□□□ -0.51
SMG6-213ENST00000573166 NF2P35240 595 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 TNNI2P48788 182 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 POLA2Q14181 598 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 CCDC144CPQ8IYA2 1237 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 SAP30BPQ9UHR5 308 aaKnown RBP11.85□□□□□ -0.51
SMG6-213ENST00000573166 USP42Q9H9J4 1324 aaKnown RBP11.85□□□□□ -0.51
SMG6-213ENST00000573166 PRR5LQ6MZQ0 368 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 TBC1D32Q96NH3 1257 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 SH2B1Q9NRF2 756 aaPredicted RBP11.85□□□□□ -0.51
SMG6-213ENST00000573166 SEC63Q9UGP8 760 aaKnown RBP11.85□□□□□ -0.51
SMG6-213ENST00000573166 CEBPZQ03701 1054 aaKnown RBP11.85□□□□□ -0.51
SMG6-213ENST00000573166 MTX1Q13505 466 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 WTAPQ15007 396 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 POTEAQ6S8J7 498 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 CCDC125Q86Z20 511 aa11.85□□□□□ -0.51
SMG6-213ENST00000573166 H7C1D1 291 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 DPY19L2Q6NUT2 758 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 PTF1AQ7RTS3 328 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 WASF1Q92558 559 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 TEKT1Q969V4 418 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 CCDC43Q96MW1 224 aaKnown RBP11.84□□□□□ -0.51
SMG6-213ENST00000573166 PHLPP1O60346 1717 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 PIK3C2AO00443 1686 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 WDHD1O75717 1129 aaPredicted RBP11.84□□□□□ -0.51
SMG6-213ENST00000573166 SCNN1DP51172 638 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 C8orf34Q49A92 452 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 ROBO1Q9Y6N7 1651 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 L1TD1Q5T7N2 865 aaKnown RBP11.84□□□□□ -0.51
SMG6-213ENST00000573166 CREB3L3Q68CJ9 461 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 HAUS7Q99871 368 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 MINPP1Q9UNW1 487 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 GPR101Q96P66 508 aaPredicted RBP11.84□□□□□ -0.51
SMG6-213ENST00000573166 VAT1LQ9HCJ6 419 aa11.84□□□□□ -0.51
SMG6-213ENST00000573166 MON2Q7Z3U7 1717 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 SGSM2O43147 1006 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 PDE6AP16499 860 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 TCP10Q12799 353 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 COL23A1Q86Y22 540 aaPredicted RBP11.83□□□□□ -0.52
SMG6-213ENST00000573166 PPFIA3O75145 1194 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 CHRNA5P30532 468 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 KIF5BP33176 963 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 WDR78Q5VTH9 848 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 CCDC73Q6ZRK6 1079 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 CHST3Q7LGC8 479 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 SLC16A10Q8TF71 515 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 ATP10DQ9P241 1426 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 SLIT3O75094 1523 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 WDR33Q9C0J8 1336 aaKnown RBP11.83□□□□□ -0.52
SMG6-213ENST00000573166 KLF18A0A0U1RQI7 1052 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 FIBPO43427 364 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 SEC24BO95487 1268 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 ANAPC15P60006 121 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 IFIT1BQ5T764 474 aaKnown RBP11.83□□□□□ -0.52
SMG6-213ENST00000573166 PI16Q6UXB8 463 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 CREBRFQ8IUR6 639 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 RTKN2Q8IZC4 609 aa11.83□□□□□ -0.52
SMG6-213ENST00000573166 NFAT5O94916 1531 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms