RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 SALL3Q9BXA9 1300 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 SALL1Q9NSC2 1324 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 GLTPD2A6NH11 291 aa13.57□□□□□ -0.24
CLN3-224ENST00000566816 TTC39AQ5SRH9 613 aa13.57□□□□□ -0.24
CLN3-224ENST00000566816 DACT2Q5SW24 774 aa13.57□□□□□ -0.24
CLN3-224ENST00000566816 TICAM2Q86XR7 235 aa13.57□□□□□ -0.24
CLN3-224ENST00000566816 ZGPATQ8N5A5 531 aaKnown RBP13.57□□□□□ -0.24
CLN3-224ENST00000566816 MRIQ9BWK5 157 aa13.57□□□□□ -0.24
CLN3-224ENST00000566816 SPEF2Q9C093 1822 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 ERC2O15083 957 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 FRAT2O75474 233 aaPredicted RBP13.56□□□□□ -0.24
CLN3-224ENST00000566816 GTF2IP78347 998 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 B4GALNT3Q6L9W6 998 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 RSBN1LQ6PCB5 846 aaPredicted RBP13.56□□□□□ -0.24
CLN3-224ENST00000566816 SPATA5Q8NB90 893 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 GMLQ99445 158 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 TLR7Q9NYK1 1049 aaKnown RBP13.56□□□□□ -0.24
CLN3-224ENST00000566816 HMG20BQ9P0W2 317 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 AOX1Q06278 1338 aa13.56□□□□□ -0.24
CLN3-224ENST00000566816 A0A1B0GUL6 1792 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 SBF1O95248 1867 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 PSMD14O00487 310 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 GLRX3O76003 335 aaKnown RBP13.55□□□□□ -0.24
CLN3-224ENST00000566816 MX1P20591 662 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 RASGRF1Q13972 1273 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
CLN3-224ENST00000566816 L3MBTL3Q96JM7 780 aaPredicted RBP13.55□□□□□ -0.24
CLN3-224ENST00000566816 LNPKQ9C0E8 428 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 KCNQ5Q9NR82 932 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 COL4A5P29400 1685 aa13.55□□□□□ -0.24
CLN3-224ENST00000566816 RAD17O75943 681 aa13.54□□□□□ -0.24
CLN3-224ENST00000566816 MCAMP43121 646 aa13.54□□□□□ -0.24
CLN3-224ENST00000566816 PDE1AP54750 535 aa13.54□□□□□ -0.24
CLN3-224ENST00000566816 HDLBPQ00341 1268 aaKnown RBP13.54□□□□□ -0.24
CLN3-224ENST00000566816 SPTY2D1Q68D10 685 aaPredicted RBP13.54□□□□□ -0.24
CLN3-224ENST00000566816 HAUS7Q99871 368 aa13.54□□□□□ -0.24
CLN3-224ENST00000566816 DICER1Q9UPY3 1922 aaKnown RBP13.53□□□□□ -0.24
CLN3-224ENST00000566816 TTF1Q15361 905 aaPredicted RBP13.53□□□□□ -0.24
CLN3-224ENST00000566816 PLEKHM2Q8IWE5 1019 aa13.53□□□□□ -0.24
CLN3-224ENST00000566816 ZNF280AP59817 542 aaPredicted RBP13.52□□□□□ -0.25
CLN3-224ENST00000566816 SCARF1Q14162 830 aa13.52□□□□□ -0.25
CLN3-224ENST00000566816 MFSD14BQ5SR56 506 aa13.52□□□□□ -0.25
CLN3-224ENST00000566816 PI4K2BQ8TCG2 481 aa13.52□□□□□ -0.25
CLN3-224ENST00000566816 ZNF541Q9H0D2 1346 aa13.52□□□□□ -0.25
CLN3-224ENST00000566816 ARAP2Q8WZ64 1704 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 MAST3O60307 1309 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 IQCA1LA6NCM1 817 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 DDNO94850 711 aaPredicted RBP13.51□□□□□ -0.25
CLN3-224ENST00000566816 CYP2E1P05181 493 aaPredicted RBP13.51□□□□□ -0.25
CLN3-224ENST00000566816 USP17L8P0C7I0 530 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 OGFOD1Q8N543 542 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 CERS5Q8N5B7 392 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 MTMR14Q8NCE2 650 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 OTUD7AQ8TE49 926 aaPredicted RBP13.51□□□□□ -0.25
CLN3-224ENST00000566816 FAM163AQ96GL9 167 aaPredicted RBP13.51□□□□□ -0.25
CLN3-224ENST00000566816 GPRC5DQ9NZD1 345 aa13.51□□□□□ -0.25
CLN3-224ENST00000566816 IQSEC3Q9UPP2 1182 aaPredicted RBP13.51□□□□□ -0.25
CLN3-224ENST00000566816 H7C1D1 291 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 PDE4AP27815 886 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 ZAP70P43403 619 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 GMPSP49915 693 aaPredicted RBP13.5□□□□□ -0.25
CLN3-224ENST00000566816 SCNN1DP51172 638 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 CHAF1AQ13111 956 aaPredicted RBP13.5□□□□□ -0.25
CLN3-224ENST00000566816 SLF2Q8IX21 1173 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 BOLA2Q9H3K6 86 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 CNOT7Q9UIV1 285 aaKnown RBP13.5□□□□□ -0.25
CLN3-224ENST00000566816 SERPINA10Q9UK55 444 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 HDAC9Q9UKV0 1011 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 GJA3Q9Y6H8 435 aa13.5□□□□□ -0.25
CLN3-224ENST00000566816 LDHBP07195 334 aaKnown RBP13.49□□□□□ -0.25
CLN3-224ENST00000566816 VEGFAP15692 232 aaPredicted RBP13.49□□□□□ -0.25
CLN3-224ENST00000566816 LRRFIP1Q32MZ4 808 aaKnown RBP13.49□□□□□ -0.25
CLN3-224ENST00000566816 HHIPL2Q6UWX4 724 aa13.49□□□□□ -0.25
CLN3-224ENST00000566816 ERICH6Q7L0X2 663 aa13.49□□□□□ -0.25
CLN3-224ENST00000566816 PAG1Q9NWQ8 432 aa13.49□□□□□ -0.25
CLN3-224ENST00000566816 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
CLN3-224ENST00000566816 CHD4Q14839 1912 aa13.49□□□□□ -0.25
CLN3-224ENST00000566816 MAP4K4O95819 1239 aaPredicted RBP13.48□□□□□ -0.25
CLN3-224ENST00000566816 LDHCP07864 332 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 LMOD1P29536 600 aaPredicted RBP13.48□□□□□ -0.25
CLN3-224ENST00000566816 GSTO1P78417 241 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 MAP3K12Q12852 859 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 PI16Q6UXB8 463 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 SNRKQ9NRH2 765 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 ADARB2Q9NS39 739 aaKnown RBP13.48□□□□□ -0.25
CLN3-224ENST00000566816 LRP2BPQ9P2M1 347 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 HACL1Q9UJ83 578 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 CCDC88AQ3V6T2 1871 aa13.48□□□□□ -0.25
CLN3-224ENST00000566816 COL1A1P02452 1464 aaPredicted RBP13.48□□□□□ -0.25
CLN3-224ENST00000566816 SCN9AQ15858 1988 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 POTECB2RU33 542 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 ZSCAN25Q6NSZ9 544 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 USP50Q70EL3 339 aaPredicted RBP13.47□□□□□ -0.25
CLN3-224ENST00000566816 PNMA8AQ86V59 439 aaPredicted RBP13.47□□□□□ -0.25
CLN3-224ENST00000566816 CERS3Q8IU89 383 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 KIAA0825Q8IV33 1275 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 KBTBD3Q8NAB2 608 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 ZC3H15Q8WU90 426 aaKnown RBP13.47□□□□□ -0.25
CLN3-224ENST00000566816 FBXW7Q969H0 707 aa13.47□□□□□ -0.25
CLN3-224ENST00000566816 NSUN4Q96CB9 384 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms