RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 LAMB2P55268 1798 aa12.15□□□□□ -0.46
SMPD3-206ENST00000566009 GTF2A2P52657 109 aa12.15□□□□□ -0.46
SMPD3-206ENST00000566009 C17orf99Q6UX52 265 aa12.15□□□□□ -0.46
SMPD3-206ENST00000566009 ASB2Q96Q27 587 aa12.15□□□□□ -0.46
SMPD3-206ENST00000566009 MXD3Q9BW11 206 aa12.15□□□□□ -0.46
SMPD3-206ENST00000566009 RRP7AQ9Y3A4 280 aaKnown RBP12.15□□□□□ -0.46
SMPD3-206ENST00000566009 PRKCZQ05513 592 aa12.14□□□□□ -0.47
SMPD3-206ENST00000566009 SUPT20HL1Q3ZLR7 823 aa12.14□□□□□ -0.47
SMPD3-206ENST00000566009 GAS2L2Q8NHY3 880 aa12.14□□□□□ -0.47
SMPD3-206ENST00000566009 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
SMPD3-206ENST00000566009 PAK6Q9NQU5 681 aaPredicted RBP12.14□□□□□ -0.47
SMPD3-206ENST00000566009 COL1A1P02452 1464 aaPredicted RBP12.14□□□□□ -0.47
SMPD3-206ENST00000566009 UFL1O94874 794 aa12.13□□□□□ -0.47
SMPD3-206ENST00000566009 NBPF12Q5TAG4 269 aaPredicted RBP12.13□□□□□ -0.47
SMPD3-206ENST00000566009 ANKLE1Q8NAG6 615 aa12.13□□□□□ -0.47
SMPD3-206ENST00000566009 PODXL2Q9NZ53 605 aa12.13□□□□□ -0.47
SMPD3-206ENST00000566009 CPA4Q9UI42 421 aa12.13□□□□□ -0.47
SMPD3-206ENST00000566009 PSME4Q14997 1843 aa12.13□□□□□ -0.47
SMPD3-206ENST00000566009 ADCY3O60266 1144 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 INHAP05111 366 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 MYL6BP14649 208 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 PODNQ7Z5L7 613 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 MORC1Q86VD1 984 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 ZBED3Q96IU2 234 aaPredicted RBP12.12□□□□□ -0.47
SMPD3-206ENST00000566009 C11orf49Q9H6J7 331 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 ZCCHC17Q9NP64 241 aaKnown RBP12.12□□□□□ -0.47
SMPD3-206ENST00000566009 GABRQQ9UN88 632 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 PPP2R3BQ9Y5P8 575 aa12.12□□□□□ -0.47
SMPD3-206ENST00000566009 ADGRA2Q96PE1 1338 aa12.11□□□□□ -0.47
SMPD3-206ENST00000566009 BTBD19C9JJ37 291 aa12.11□□□□□ -0.47
SMPD3-206ENST00000566009 DACT2Q5SW24 774 aa12.11□□□□□ -0.47
SMPD3-206ENST00000566009 MUC6Q6W4X9 2439 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 ELNP15502 786 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 TMEM31Q5JXX7 168 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 EPHX3Q9H6B9 360 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 ANKIB1Q9P2G1 1089 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 GGA1Q9UJY5 639 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 NCOR1O75376 2440 aa12.1□□□□□ -0.47
SMPD3-206ENST00000566009 MMP14P50281 582 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 MRPS5P82675 430 aaKnown RBP12.09□□□□□ -0.47
SMPD3-206ENST00000566009 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.09□□□□□ -0.47
SMPD3-206ENST00000566009 NLRP10Q86W26 655 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 NECAB3Q96P71 396 aaPredicted RBP12.09□□□□□ -0.47
SMPD3-206ENST00000566009 THEGQ9P2T0 379 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 TRMT112Q9UI30 125 aaKnown RBP12.09□□□□□ -0.47
SMPD3-206ENST00000566009 CDH23Q9H251 3354 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 SH3TC1Q8TE82 1336 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 MYO3BQ8WXR4 1341 aa12.09□□□□□ -0.47
SMPD3-206ENST00000566009 CETPP11597 493 aa12.08□□□□□ -0.48
SMPD3-206ENST00000566009 RPS8P62241 208 aaKnown RBP12.08□□□□□ -0.48
SMPD3-206ENST00000566009 PXYLP1Q8TE99 480 aa12.08□□□□□ -0.48
SMPD3-206ENST00000566009 COL4A1P02462 1669 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 FLT3LGP49771 235 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 FCGRTP55899 365 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 SMAD3P84022 425 aaKnown RBP12.07□□□□□ -0.48
SMPD3-206ENST00000566009 SF3B3Q15393 1217 aaKnown RBP12.07□□□□□ -0.48
SMPD3-206ENST00000566009 IL27Q8NEV9 243 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 PPM1EQ8WY54 764 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 FBXW7Q969H0 707 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 LBHD1Q9BQE6 289 aaPredicted RBP12.07□□□□□ -0.48
SMPD3-206ENST00000566009 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.07□□□□□ -0.48
SMPD3-206ENST00000566009 ZNF804BA4D1E1 1349 aa12.07□□□□□ -0.48
SMPD3-206ENST00000566009 VGLL4Q14135 290 aa12.06□□□□□ -0.48
SMPD3-206ENST00000566009 SHHQ15465 462 aa12.06□□□□□ -0.48
SMPD3-206ENST00000566009 STRIP1Q5VSL9 837 aa12.06□□□□□ -0.48
SMPD3-206ENST00000566009 KIAA0825Q8IV33 1275 aa12.06□□□□□ -0.48
SMPD3-206ENST00000566009 MAP3K9P80192 1104 aa12.05□□□□□ -0.48
SMPD3-206ENST00000566009 GRIN2CQ14957 1233 aa12.05□□□□□ -0.48
SMPD3-206ENST00000566009 MTMR14Q8NCE2 650 aa12.05□□□□□ -0.48
SMPD3-206ENST00000566009 PFASO15067 1338 aa12.05□□□□□ -0.48
SMPD3-206ENST00000566009 BDP1A6H8Y1 2624 aa12.04□□□□□ -0.48
SMPD3-206ENST00000566009 DIAPH1O60610 1272 aaKnown RBP12.04□□□□□ -0.48
SMPD3-206ENST00000566009 IRF5Q13568 498 aa12.04□□□□□ -0.48
SMPD3-206ENST00000566009 DLGAP5Q15398 846 aa12.04□□□□□ -0.48
SMPD3-206ENST00000566009 OTOFQ9HC10 1997 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 CLRN2A0PK11 232 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 SPDYE5A6NIY4 337 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 GPR37L1O60883 481 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 SNAPC2Q13487 334 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 RASA3Q14644 834 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 LRRC26Q2I0M4 334 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 HSP90AB3PQ58FF7 597 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 MCM10Q7L590 875 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 ZNF428Q96B54 188 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 C11orf16Q9NQ32 467 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 MIS18AQ9NYP9 233 aa12.03□□□□□ -0.48
SMPD3-206ENST00000566009 DDX60LQ5H9U9 1706 aaKnown RBP12.03□□□□□ -0.48
SMPD3-206ENST00000566009 IRF6O14896 467 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 FOXK2Q01167 660 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 C9orf50Q5SZB4 431 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 THUMPD2Q9BTF0 503 aaKnown RBP12.02□□□□□ -0.49
SMPD3-206ENST00000566009 VEZTQ9HBM0 779 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 OGDHLQ9ULD0 1010 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 PCDHAC2Q9Y5I4 1007 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 CSADQ9Y600 493 aa12.02□□□□□ -0.49
SMPD3-206ENST00000566009 COL3A1P02461 1466 aaPredicted RBP12.02□□□□□ -0.49
SMPD3-206ENST00000566009 PDHXO00330 501 aa12.01□□□□□ -0.49
SMPD3-206ENST00000566009 BCRP11274 1271 aa12.01□□□□□ -0.49
SMPD3-206ENST00000566009 BMP1P13497 986 aa12.01□□□□□ -0.49
SMPD3-206ENST00000566009 ATP2B4P23634 1241 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms