RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 NXPE4Q6UWF7 544 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 MAP4K3Q8IVH8 894 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 GLIS3Q8NEA6 775 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 KLHDC7BQ96G42 594 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 ABCB6Q9NP58 842 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 USP21Q9UK80 565 aa7.53□□□□□ -1.2
PALB2-203ENST00000565038 TMEM238LA0A1B0GVL6 79 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 TM4SF5O14894 197 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 DDX3YO15523 660 aaKnown RBP7.52□□□□□ -1.21
PALB2-203ENST00000565038 EAPPQ56P03 285 aaPredicted RBP7.52□□□□□ -1.21
PALB2-203ENST00000565038 FBF1Q8TES7 1133 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 NACC1Q96RE7 527 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 SRA1Q9HD15 236 aaKnown RBP7.52□□□□□ -1.21
PALB2-203ENST00000565038 SEC31BQ9NQW1 1179 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 RNF19AQ9NV58 838 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 KCNK4Q9NYG8 393 aa7.52□□□□□ -1.21
PALB2-203ENST00000565038 ESRRAP11474 423 aaPredicted RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 CD68P34810 354 aaPredicted RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 FCGRTP55899 365 aa7.51□□□□□ -1.21
PALB2-203ENST00000565038 PIP4K2BP78356 416 aa7.51□□□□□ -1.21
PALB2-203ENST00000565038 FOXD4L6Q3SYB3 417 aaPredicted RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 PRPF40BQ6NWY9 871 aaKnown RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 IGF2-ASQ6U949 168 aa7.51□□□□□ -1.21
PALB2-203ENST00000565038 FOXD4L3Q6VB84 417 aaPredicted RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 LENG1Q96BZ8 264 aaPredicted RBP7.51□□□□□ -1.21
PALB2-203ENST00000565038 TRAK1Q9UPV9 953 aa7.51□□□□□ -1.21
PALB2-203ENST00000565038 C9orf172C9J069 976 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 ADAM11O75078 769 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 NLRP12P59046 1061 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 TAGLNQ01995 201 aaKnown RBP7.5□□□□□ -1.21
PALB2-203ENST00000565038 PCDH1Q08174 1060 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 C19orf57Q0VDD7 668 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 ZNF423Q2M1K9 1284 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 KLHL23Q8NBE8 558 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 WNT8BQ93098 351 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 OSBPL7Q9BZF2 842 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 CLEC4MQ9H2X3 399 aaPredicted RBP7.5□□□□□ -1.21
PALB2-203ENST00000565038 ZNF576Q9H609 170 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 PPP4R2Q9NY27 417 aa7.5□□□□□ -1.21
PALB2-203ENST00000565038 ALX3O95076 343 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 WISP1O95388 367 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 ITPKAP23677 461 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 ARL4DP49703 201 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 MFAP1P55081 439 aaKnown RBP7.49□□□□□ -1.21
PALB2-203ENST00000565038 MBTPS1Q14703 1052 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 COL19A1Q14993 1142 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 SUZ12Q15022 739 aaKnown RBP7.49□□□□□ -1.21
PALB2-203ENST00000565038 DTHD1Q6ZMT9 781 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 FOXD4L4Q8WXT5 416 aaPredicted RBP7.49□□□□□ -1.21
PALB2-203ENST00000565038 DUSP9Q99956 384 aaKnown RBP7.49□□□□□ -1.21
PALB2-203ENST00000565038 OSGEPQ9NPF4 335 aa7.49□□□□□ -1.21
PALB2-203ENST00000565038 PRPF40AO75400 957 aaKnown RBP7.48□□□□□ -1.21
PALB2-203ENST00000565038 ZNF157P51786 506 aaPredicted RBP7.48□□□□□ -1.21
PALB2-203ENST00000565038 NRG1Q02297 640 aaPredicted RBP7.48□□□□□ -1.21
PALB2-203ENST00000565038 GSTM4Q03013 218 aa7.48□□□□□ -1.21
PALB2-203ENST00000565038 ADGRE1Q14246 886 aa7.48□□□□□ -1.21
PALB2-203ENST00000565038 AGGF1Q8N302 714 aaeCLIP7.48□□□□□ -1.21
PALB2-203ENST00000565038 SPOCK3Q9BQ16 436 aa7.48□□□□□ -1.21
PALB2-203ENST00000565038 MRPL18Q9H0U6 180 aaKnown RBP7.48□□□□□ -1.21
PALB2-203ENST00000565038 SPG7Q9UQ90 795 aa7.48□□□□□ -1.21
PALB2-203ENST00000565038 AKAP2Q9Y2D5 859 aa7.48□□□□□ -1.21
PALB2-203ENST00000565038 MSTNO14793 375 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 PROCP04070 461 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 GATA4P43694 442 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 IREB2P48200 963 aaKnown RBP7.47□□□□□ -1.21
PALB2-203ENST00000565038 FAAP100Q0VG06 881 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 DUOXA2Q1HG44 320 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 ACAD11Q709F0 780 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 FBXO33Q7Z6M2 555 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 DCAF11Q8TEB1 546 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 UBASH3BQ8TF42 649 aa7.47□□□□□ -1.21
PALB2-203ENST00000565038 ERCC3P19447 782 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 NOS3P29474 1203 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 PTPN12Q05209 780 aaKnown RBP7.46□□□□□ -1.22
PALB2-203ENST00000565038 WFDC12Q8WWY7 111 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 USP26Q9BXU7 913 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 AKTIPQ9H8T0 292 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 PARP2Q9UGN5 583 aa7.46□□□□□ -1.22
PALB2-203ENST00000565038 F8W735 103 aaPredicted RBP7.45□□□□□ -1.22
PALB2-203ENST00000565038 B3GALT4O96024 378 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 GNA15P30679 374 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 TXNRD3Q86VQ6 643 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 C3orf58Q8NDZ4 430 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 FAM161BQ96MY7 647 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 SOX17Q9H6I2 414 aaPredicted RBP7.45□□□□□ -1.22
PALB2-203ENST00000565038 C12orf49Q9H741 205 aa7.45□□□□□ -1.22
PALB2-203ENST00000565038 GIPC1O14908 333 aa7.44□□□□□ -1.22
PALB2-203ENST00000565038 GSTT1P30711 240 aa7.44□□□□□ -1.22
PALB2-203ENST00000565038 RPS26P11Q5JNZ5 115 aaPredicted RBP7.44□□□□□ -1.22
PALB2-203ENST00000565038 KIAA1211Q6ZU35 1233 aa7.44□□□□□ -1.22
PALB2-203ENST00000565038 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.44□□□□□ -1.22
PALB2-203ENST00000565038 TMEM130Q8N3G9 435 aa7.44□□□□□ -1.22
PALB2-203ENST00000565038 BCL2L13Q9BXK5 485 aa7.44□□□□□ -1.22
PALB2-203ENST00000565038 IGHA1P01876 353 aa7.43□□□□□ -1.22
PALB2-203ENST00000565038 USP17L7P0C7H9 530 aa7.43□□□□□ -1.22
PALB2-203ENST00000565038 XRCC5P13010 732 aaKnown RBP7.43□□□□□ -1.22
PALB2-203ENST00000565038 FGD1P98174 961 aa7.43□□□□□ -1.22
PALB2-203ENST00000565038 XPCQ01831 940 aaPredicted RBP7.43□□□□□ -1.22
PALB2-203ENST00000565038 DOC2BQ14184 412 aa7.43□□□□□ -1.22
PALB2-203ENST00000565038 TRIM56Q9BRZ2 755 aaKnown RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms