RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MCAMP43121 646 aa25.15■■□□□ 1.62
CLN3-212ENST00000564574 PRELPP51888 382 aa25.15■■□□□ 1.62
CLN3-212ENST00000564574 RASGRF1Q13972 1273 aa25.15■■□□□ 1.62
CLN3-212ENST00000564574 ZNF784Q8NCA9 323 aaPredicted RBP25.15■■□□□ 1.62
CLN3-212ENST00000564574 ZNRF3Q9ULT6 936 aa25.15■■□□□ 1.62
CLN3-212ENST00000564574 ZNF646O15015 1829 aaPredicted RBP25.14■■□□□ 1.62
CLN3-212ENST00000564574 RGS3P49796 1198 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 TSHZ3Q63HK5 1081 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 SPATA5Q8NB90 893 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 HAUS7Q99871 368 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 BOLA2Q9H3K6 86 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 HMG20BQ9P0W2 317 aa25.14■■□□□ 1.62
CLN3-212ENST00000564574 FAM205AQ6ZU69 1335 aa25.13■■□□□ 1.61
CLN3-212ENST00000564574 SCARF1Q14162 830 aa25.13■■□□□ 1.61
CLN3-212ENST00000564574 IQSEC3Q9UPP2 1182 aaPredicted RBP25.13■■□□□ 1.61
CLN3-212ENST00000564574 AK9Q5TCS8 1911 aa25.13■■□□□ 1.61
CLN3-212ENST00000564574 COL1A1P02452 1464 aaPredicted RBP25.12■■□□□ 1.61
CLN3-212ENST00000564574 TTC22Q5TAA0 569 aa25.11■■□□□ 1.61
CLN3-212ENST00000564574 SKAP1Q86WV1 359 aa25.11■■□□□ 1.61
CLN3-212ENST00000564574 WDR66Q8TBY9 1149 aa25.11■■□□□ 1.61
CLN3-212ENST00000564574 TBC1D22AQ8WUA7 517 aa25.11■■□□□ 1.61
CLN3-212ENST00000564574 DOCK2Q92608 1830 aa25.11■■□□□ 1.61
CLN3-212ENST00000564574 YDJCA8MPS7 323 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 FZD9O00144 591 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 ZAP70P43403 619 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 STRIP1Q5VSL9 837 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 RNF181Q9P0P0 153 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 SALL1Q9NSC2 1324 aa25.1■■□□□ 1.61
CLN3-212ENST00000564574 USP17L3A6NCW0 530 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 USP17L4A6NCW7 530 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 IGSF3O75054 1194 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 FKBP1AP62942 108 aaKnown RBP25.09■■□□□ 1.61
CLN3-212ENST00000564574 GTF2IP78347 998 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 CHAF1AQ13111 956 aaPredicted RBP25.09■■□□□ 1.61
CLN3-212ENST00000564574 TTF1Q15361 905 aaPredicted RBP25.09■■□□□ 1.61
CLN3-212ENST00000564574 USP17L1Q7RTZ2 530 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 ZGPATQ8N5A5 531 aaKnown RBP25.09■■□□□ 1.61
CLN3-212ENST00000564574 DNAJC2Q99543 621 aaKnown RBP25.09■■□□□ 1.61
CLN3-212ENST00000564574 SNRKQ9NRH2 765 aa25.09■■□□□ 1.61
CLN3-212ENST00000564574 MYH7P12883 1935 aa25.08■■□□□ 1.61
CLN3-212ENST00000564574 EIF6P56537 245 aaKnown RBP25.08■■□□□ 1.61
CLN3-212ENST00000564574 C9orf131Q5VYM1 1079 aa25.08■■□□□ 1.61
CLN3-212ENST00000564574 TTLL5Q6EMB2 1281 aa25.08■■□□□ 1.61
CLN3-212ENST00000564574 PI16Q6UXB8 463 aa25.08■■□□□ 1.61
CLN3-212ENST00000564574 PAG1Q9NWQ8 432 aa25.08■■□□□ 1.61
CLN3-212ENST00000564574 ZC3H4Q9UPT8 1303 aaKnown RBP25.08■■□□□ 1.6
CLN3-212ENST00000564574 MYO5AQ9Y4I1 1855 aaKnown RBP25.07■■□□□ 1.6
CLN3-212ENST00000564574 CYP2E1P05181 493 aaPredicted RBP25.06■■□□□ 1.6
CLN3-212ENST00000564574 TNIP1Q15025 636 aa25.06■■□□□ 1.6
CLN3-212ENST00000564574 CIAPIN1Q6FI81 312 aa25.06■■□□□ 1.6
CLN3-212ENST00000564574 FBXW7Q969H0 707 aa25.06■■□□□ 1.6
CLN3-212ENST00000564574 MYO3BQ8WXR4 1341 aa25.06■■□□□ 1.6
CLN3-212ENST00000564574 MAST2Q6P0Q8 1798 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 GOLIM4O00461 696 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 CXCL9Q07325 125 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 DACT2Q5SW24 774 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 SPTY2D1Q68D10 685 aaPredicted RBP25.05■■□□□ 1.6
CLN3-212ENST00000564574 CNTROBQ8N137 903 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 EVI5LQ96CN4 794 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 KCNQ5Q9NR82 932 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 SUGT1Q9Y2Z0 365 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 NDUFB9Q9Y6M9 179 aa25.05■■□□□ 1.6
CLN3-212ENST00000564574 TRIM6-TRIM34B2RNG4 842 aa25.04■■□□□ 1.6
CLN3-212ENST00000564574 VIL1P09327 827 aaKnown RBP25.04■■□□□ 1.6
CLN3-212ENST00000564574 GSPT1P15170 499 aaKnown RBP25.04■■□□□ 1.6
CLN3-212ENST00000564574 BMP2KLQ5H9B9 411 aa25.04■■□□□ 1.6
CLN3-212ENST00000564574 MFSD14BQ5SR56 506 aa25.04■■□□□ 1.6
CLN3-212ENST00000564574 TICAM2Q86XR7 235 aa25.04■■□□□ 1.6
CLN3-212ENST00000564574 JAG2Q9Y219 1238 aa25.04■■□□□ 1.6
CLN3-212ENST00000564574 RAD17O75943 681 aa25.03■■□□□ 1.6
CLN3-212ENST00000564574 ANTXR1Q9H6X2 564 aa25.03■■□□□ 1.6
CLN3-212ENST00000564574 PSMD14O00487 310 aa25.02■■□□□ 1.6
CLN3-212ENST00000564574 MAP4K4O95819 1239 aaPredicted RBP25.02■■□□□ 1.6
CLN3-212ENST00000564574 RSBN1LQ6PCB5 846 aaPredicted RBP25.02■■□□□ 1.6
CLN3-212ENST00000564574 KBTBD3Q8NAB2 608 aa25.02■■□□□ 1.6
CLN3-212ENST00000564574 ABCF2Q9UG63 623 aa25.02■■□□□ 1.6
CLN3-212ENST00000564574 LRRFIP1Q32MZ4 808 aaKnown RBP25.01■■□□□ 1.59
CLN3-212ENST00000564574 TMED8Q6PL24 325 aaPredicted RBP25.01■■□□□ 1.59
CLN3-212ENST00000564574 ERICH6Q7L0X2 663 aa25.01■■□□□ 1.59
CLN3-212ENST00000564574 AGBL3Q8NEM8 1001 aa25.01■■□□□ 1.59
CLN3-212ENST00000564574 RILPL2Q969X0 211 aa25.01■■□□□ 1.59
CLN3-212ENST00000564574 EDC3Q96F86 508 aaKnown RBP25.01■■□□□ 1.59
CLN3-212ENST00000564574 PIH1D3Q9NQM4 214 aaKnown RBP25.01■■□□□ 1.59
CLN3-212ENST00000564574 LRP2BPQ9P2M1 347 aa25.01■■□□□ 1.59
CLN3-212ENST00000564574 RFX7Q2KHR2 1363 aa25.01■■□□□ 1.59
CLN3-212ENST00000564574 LDHBP07195 334 aaKnown RBP25■■□□□ 1.59
CLN3-212ENST00000564574 SDSP20132 328 aa25■■□□□ 1.59
CLN3-212ENST00000564574 RPS12P25398 132 aaKnown RBP25■■□□□ 1.59
CLN3-212ENST00000564574 MAP3K12Q12852 859 aa25■■□□□ 1.59
CLN3-212ENST00000564574 TBC1D9Q6ZT07 1266 aa25■■□□□ 1.59
CLN3-212ENST00000564574 DDX24Q9GZR7 859 aaKnown RBP eCLIP25■■□□□ 1.592e-6■■■■■ 40.7
CLN3-212ENST00000564574 ZNF541Q9H0D2 1346 aa25■■□□□ 1.59
CLN3-212ENST00000564574 GOLGB1Q14789 3259 aaKnown RBP25■■□□□ 1.59
CLN3-212ENST00000564574 MAST3O60307 1309 aa24.99■■□□□ 1.59
CLN3-212ENST00000564574 ZSCAN25Q6NSZ9 544 aa24.99■■□□□ 1.59
CLN3-212ENST00000564574 GPC2Q8N158 579 aa24.99■■□□□ 1.59
CLN3-212ENST00000564574 CERS5Q8N5B7 392 aa24.99■■□□□ 1.59
CLN3-212ENST00000564574 FSD1Q9BTV5 496 aa24.99■■□□□ 1.59
CLN3-212ENST00000564574 MMP14P50281 582 aa24.98■■□□□ 1.59
CLN3-212ENST00000564574 RAI14Q9P0K7 980 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms