RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TMC6Q7Z403 805 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 IFNL2Q8IZJ0 200 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 DDX17Q92841 729 aaKnown RBP15.38■□□□□ 0.05
CLN3-210ENST00000563874 SIPA1L3O60292 1781 aaPredicted RBP15.38■□□□□ 0.05
CLN3-210ENST00000563874 CYP27B1O15528 508 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 RNF113AO15541 343 aaKnown RBP15.38■□□□□ 0.05
CLN3-210ENST00000563874 WASHC4Q2M389 1173 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 ADALQ6DHV7 355 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 LINC00301Q8NCQ3 95 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 KIF18AQ8NI77 898 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 ZNF274Q96GC6 653 aaPredicted RBP15.38■□□□□ 0.05
CLN3-210ENST00000563874 PALLDQ8WX93 1383 aa15.38■□□□□ 0.05
CLN3-210ENST00000563874 A0A1B0GUL7 405 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 PLBD2Q8NHP8 589 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 C8orf76Q96K31 380 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 CCDC85AQ96PX6 553 aaPredicted RBP15.37■□□□□ 0.05
CLN3-210ENST00000563874 RTEL1Q9NZ71 1219 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 KIAA1468Q9P260 1216 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 CHRNA2Q15822 529 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 ZNF771Q7L3S4 317 aaPredicted RBP15.37■□□□□ 0.05
CLN3-210ENST00000563874 CABLES1Q8TDN4 633 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 ZBTB3Q9H5J0 574 aa15.37■□□□□ 0.05
CLN3-210ENST00000563874 KLF18A0A0U1RQI7 1052 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 GOLGA8BA8MQT2 603 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 NBPF26B4DH59 902 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 CABP4P57796 275 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 NBPF14Q5TI25 921 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 E4F1Q66K89 784 aaPredicted RBP15.36■□□□□ 0.05
CLN3-210ENST00000563874 ATL3Q6DD88 541 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 ARMCX5Q6P1M9 558 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 NBPF10Q6P3W6 841 aaKnown RBP15.36■□□□□ 0.05
CLN3-210ENST00000563874 FBXO38Q6PIJ6 1188 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 NBPF15Q8N660 670 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 MEGF6O75095 1541 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 LMOD1P29536 600 aaPredicted RBP15.36■□□□□ 0.05
CLN3-210ENST00000563874 ORC3Q9UBD5 711 aaPredicted RBP15.36■□□□□ 0.05
CLN3-210ENST00000563874 FER1L4A9Z1Z3 1794 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 LAMA4Q16363 1823 aa15.36■□□□□ 0.05
CLN3-210ENST00000563874 PHRF1Q9P1Y6 1649 aaKnown RBP15.36■□□□□ 0.05
CLN3-210ENST00000563874 KIF28PB7ZC32 967 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 SPTLC2O15270 562 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 MARCKSP29966 332 aaPredicted RBP15.35■□□□□ 0.05
CLN3-210ENST00000563874 PTPN21Q16825 1174 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 LRRN4CLQ8ND94 238 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 H7C1W4 665 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 PRC1O43663 620 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 KIF20AO95235 890 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 SLC3A2P08195 630 aaKnown RBP15.35■□□□□ 0.05
CLN3-210ENST00000563874 IL15P40933 162 aaPredicted RBP15.35■□□□□ 0.05
CLN3-210ENST00000563874 SYT10Q6XYQ8 523 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 ZNF397Q8NF99 534 aaPredicted RBP15.35■□□□□ 0.05
CLN3-210ENST00000563874 RGPD5Q99666 1765 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 SLIT3O75094 1523 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 ZNF202O95125 648 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 ADORA1P30542 326 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 GSDMDP57764 484 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 DCAF5Q96JK2 942 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 NEDD4P46934 1319 aa15.35■□□□□ 0.05
CLN3-210ENST00000563874 EYA2O00167 538 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 CPLX1O14810 134 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 FOXP2O15409 715 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 GORABQ5T7V8 394 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 MYSM1Q5VVJ2 828 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 PI16Q6UXB8 463 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 FBXO18Q8NFZ0 1043 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 AIFM3Q96NN9 605 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 CWC25Q9NXE8 425 aaPredicted RBP15.34■□□□□ 0.05
CLN3-210ENST00000563874 SLU7O95391 586 aaKnown RBP15.34■□□□□ 0.05
CLN3-210ENST00000563874 FGAP02671 866 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 A1BGP04217 495 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 ATP1A3P13637 1013 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 SFPQP23246 707 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLN3-210ENST00000563874 GTF2E1P29083 439 aaPredicted RBP15.34■□□□□ 0.05
CLN3-210ENST00000563874 SYNE3Q6ZMZ3 975 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 ERO1AQ96HE7 468 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 PPP1R13BQ96KQ4 1090 aa15.34■□□□□ 0.05
CLN3-210ENST00000563874 OSBPL5Q9H0X9 879 aaPredicted RBP15.34■□□□□ 0.05
CLN3-210ENST00000563874 A0A1W2PQ27 194 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 A0A1W2PQ64 194 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 A0A1W2PQD8 194 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 KCNG4Q8TDN1 519 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 ZFP91Q96JP5 570 aaPredicted RBP15.33■□□□□ 0.05
CLN3-210ENST00000563874 DENND2AQ9ULE3 1009 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 HPS5Q9UPZ3 1129 aa15.33■□□□□ 0.05
CLN3-210ENST00000563874 ZNF330Q9Y3S2 320 aaPredicted RBP15.33■□□□□ 0.05
CLN3-210ENST00000563874 MORC2Q9Y6X9 1032 aaPredicted RBP15.33■□□□□ 0.05
CLN3-210ENST00000563874 AFDNP55196 1824 aaKnown RBP15.33■□□□□ 0.05
CLN3-210ENST00000563874 RXRAP19793 462 aa15.33■□□□□ 0.04
CLN3-210ENST00000563874 SCARF1Q14162 830 aa15.33■□□□□ 0.04
CLN3-210ENST00000563874 ERCC6LQ2NKX8 1250 aa15.33■□□□□ 0.04
CLN3-210ENST00000563874 ST7Q9NRC1 585 aa15.33■□□□□ 0.04
CLN3-210ENST00000563874 PFKFB1P16118 471 aa15.32■□□□□ 0.04
CLN3-210ENST00000563874 IMMTQ16891 758 aaKnown RBP15.32■□□□□ 0.04
CLN3-210ENST00000563874 MROH7-TTC4A0A0A0MT08 1334 aa15.32■□□□□ 0.04
CLN3-210ENST00000563874 WDHD1O75717 1129 aaPredicted RBP15.32■□□□□ 0.04
CLN3-210ENST00000563874 PUS7LQ9H0K6 701 aaKnown RBP15.32■□□□□ 0.04
CLN3-210ENST00000563874 ANTXR2P58335 489 aa15.32■□□□□ 0.04
CLN3-210ENST00000563874 NCAPHQ15003 741 aa15.32■□□□□ 0.04
CLN3-210ENST00000563874 POLR3EQ9NVU0 708 aa15.32■□□□□ 0.04
CLN3-210ENST00000563874 CEP126Q9P2H0 1117 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms