RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ZFYVE1Q9HBF4 777 aa5.96□□□□□ -1.46
VPS35-203ENST00000562420 C9orf172C9J069 976 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 TM4SF5O14894 197 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 DEAF1O75398 565 aaPredicted RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 APBA3O96018 575 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 POLR3DP05423 398 aaPredicted RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 P4HBP07237 508 aaKnown RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 XRCC5P13010 732 aaKnown RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 EPHA1P21709 976 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 RPS26P11Q5JNZ5 115 aaPredicted RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 IGF2-ASQ6U949 168 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 ADAMTSL4Q6UY14 1074 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 LENG1Q96BZ8 264 aaPredicted RBP5.95□□□□□ -1.46
VPS35-203ENST00000562420 HHIPQ96QV1 700 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 LACRTQ9GZZ8 138 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 NLRP2Q9NX02 1062 aa5.95□□□□□ -1.46
VPS35-203ENST00000562420 A0A096LPE4 126 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 A0A1W2PPZ6 126 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 PRPF40AO75400 957 aaKnown RBP5.94□□□□□ -1.46
VPS35-203ENST00000562420 MAPK8P45983 427 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 TMCO4Q5TGY1 634 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 VN1R5Q7Z5H4 357 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 GLIS3Q8NEA6 775 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 ANKRD24Q8TF21 1146 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 EHD4Q9H223 541 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 ABCB6Q9NP58 842 aa5.94□□□□□ -1.46
VPS35-203ENST00000562420 FSCN2O14926 492 aa5.93□□□□□ -1.46
VPS35-203ENST00000562420 LDHBP07195 334 aaKnown RBP5.93□□□□□ -1.46
VPS35-203ENST00000562420 GRM2Q14416 872 aa5.93□□□□□ -1.46
VPS35-203ENST00000562420 EPS8L3Q8TE67 593 aaKnown RBP5.93□□□□□ -1.46
VPS35-203ENST00000562420 CLEC4MQ9H2X3 399 aaPredicted RBP5.93□□□□□ -1.46
VPS35-203ENST00000562420 ZNF576Q9H609 170 aa5.93□□□□□ -1.46
VPS35-203ENST00000562420 SEC31BQ9NQW1 1179 aa5.93□□□□□ -1.46
VPS35-203ENST00000562420 SPG7Q9UQ90 795 aa5.93□□□□□ -1.46
VPS35-203ENST00000562420 FAM229AH3BQW9 127 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 GADD45BO75293 160 aaPredicted RBP5.92□□□□□ -1.46
VPS35-203ENST00000562420 TRPA1O75762 1119 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 ESRRAP11474 423 aaPredicted RBP5.92□□□□□ -1.46
VPS35-203ENST00000562420 SELPP16109 830 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 GRIA4P48058 902 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 ARL4DP49703 201 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 IKBKEQ14164 716 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 ADGRE1Q14246 886 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS35-203ENST00000562420 EAPPQ56P03 285 aaPredicted RBP5.92□□□□□ -1.46
VPS35-203ENST00000562420 ZMYM1Q5SVZ6 1142 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 FBXO33Q7Z6M2 555 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 TMEM130Q8N3G9 435 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 MRPL18Q9H0U6 180 aaKnown RBP5.92□□□□□ -1.46
VPS35-203ENST00000562420 SH2B1Q9NRF2 756 aaPredicted RBP5.92□□□□□ -1.46
VPS35-203ENST00000562420 PPP4R2Q9NY27 417 aa5.92□□□□□ -1.46
VPS35-203ENST00000562420 TMEM238LA0A1B0GVL6 79 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 LINC01387J3KSC0 135 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 B3GALT4O96024 378 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 GNA15P30679 374 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 CD68P34810 354 aaPredicted RBP5.91□□□□□ -1.46
VPS35-203ENST00000562420 ITGAEP38570 1179 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 C19orf57Q0VDD7 668 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 GRIK4Q16099 956 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 ASAP3Q8TDY4 903 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 BCO2Q9BYV7 579 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 PPM1HQ9ULR3 514 aa5.91□□□□□ -1.46
VPS35-203ENST00000562420 GSTT1P30711 240 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 GATA4P43694 442 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 PCDH1Q08174 1060 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 MBTPS1Q14703 1052 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 FOXD4L6Q3SYB3 417 aaPredicted RBP5.9□□□□□ -1.46
VPS35-203ENST00000562420 FOXD4L3Q6VB84 417 aaPredicted RBP5.9□□□□□ -1.46
VPS35-203ENST00000562420 Q6ZS46 218 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 GALNT11Q8NCW6 608 aa5.9□□□□□ -1.46
VPS35-203ENST00000562420 METTL12A8MUP2 240 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 SOX1O00570 391 aaPredicted RBP5.89□□□□□ -1.47
VPS35-203ENST00000562420 SPRED3Q2MJR0 410 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 PI16Q6UXB8 463 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.89□□□□□ -1.47
VPS35-203ENST00000562420 TXNRD3Q86VQ6 643 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 C3orf58Q8NDZ4 430 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 DDX54Q8TDD1 881 aaKnown RBP5.89□□□□□ -1.47
VPS35-203ENST00000562420 C12orf49Q9H741 205 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 FAM8A1Q9UBU6 413 aa5.89□□□□□ -1.47
VPS35-203ENST00000562420 MFAP1P55081 439 aaKnown RBP5.88□□□□□ -1.47
VPS35-203ENST00000562420 HP1BP3Q5SSJ5 553 aaPredicted RBP5.88□□□□□ -1.47
VPS35-203ENST00000562420 TXNDC11Q6PKC3 985 aa5.88□□□□□ -1.47
VPS35-203ENST00000562420 SHISA2Q6UWI4 295 aa5.88□□□□□ -1.47
VPS35-203ENST00000562420 KLHDC7BQ96G42 594 aa5.88□□□□□ -1.47
VPS35-203ENST00000562420 NRSN2Q9GZP1 204 aa5.88□□□□□ -1.47
VPS35-203ENST00000562420 WWC3Q9ULE0 1092 aa5.88□□□□□ -1.47
VPS35-203ENST00000562420 SCO2A0A1W2PP80 73 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 F8W735 103 aaPredicted RBP5.87□□□□□ -1.47
VPS35-203ENST00000562420 ADAM11O75078 769 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 TRIM26Q12899 539 aaPredicted RBP5.87□□□□□ -1.47
VPS35-203ENST00000562420 AP3B2Q13367 1082 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 ZNF423Q2M1K9 1284 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 NXPE4Q6UWF7 544 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 DTHD1Q6ZMT9 781 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 FOXD4L4Q8WXT5 416 aaPredicted RBP5.87□□□□□ -1.47
VPS35-203ENST00000562420 SETDB2Q96T68 719 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 OSBPL7Q9BZF2 842 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 USP21Q9UK80 565 aa5.87□□□□□ -1.47
VPS35-203ENST00000562420 SYNGAP1Q96PV0 1343 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms