RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 NEK1Q96PY6 1258 aa15.4■□□□□ 0.06
SNX1-211ENST00000560829 SH2B1Q9NRF2 756 aaPredicted RBP15.4■□□□□ 0.06
SNX1-211ENST00000560829 TFCP2L1Q9NZI6 479 aa15.4■□□□□ 0.06
SNX1-211ENST00000560829 CTNNA3Q9UI47 895 aa15.4■□□□□ 0.06
SNX1-211ENST00000560829 PDS5AQ29RF7 1337 aaKnown RBP15.39■□□□□ 0.05
SNX1-211ENST00000560829 ZNF532Q9HCE3 1301 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 SEMA3EO15041 775 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 GPAA1O43292 621 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 HMGB1P09429 215 aaKnown RBP15.39■□□□□ 0.05
SNX1-211ENST00000560829 MCM4P33991 863 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 NOL8Q76FK4 1167 aaKnown RBP15.39■□□□□ 0.05
SNX1-211ENST00000560829 NLGN1Q8N2Q7 840 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 FAM84BQ96KN1 310 aaPredicted RBP15.39■□□□□ 0.05
SNX1-211ENST00000560829 WWC3Q9ULE0 1092 aa15.39■□□□□ 0.05
SNX1-211ENST00000560829 GYG1P46976 350 aa15.38■□□□□ 0.05
SNX1-211ENST00000560829 RGPD3A6NKT7 1758 aaPredicted RBP15.38■□□□□ 0.05
SNX1-211ENST00000560829 RGPD4Q7Z3J3 1758 aa15.38■□□□□ 0.05
SNX1-211ENST00000560829 IRS2Q9Y4H2 1338 aa15.38■□□□□ 0.05
SNX1-211ENST00000560829 WTIPA6NIX2 430 aaPredicted RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 HOXA10P31260 410 aaPredicted RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 COL9A3Q14050 684 aaPredicted RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 STOX1Q6ZVD7 989 aa15.37■□□□□ 0.05
SNX1-211ENST00000560829 COL23A1Q86Y22 540 aaPredicted RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 DENND2AQ9ULE3 1009 aa15.37■□□□□ 0.05
SNX1-211ENST00000560829 TNS1Q9HBL0 1735 aaKnown RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 FBXO41Q8TF61 875 aa15.37■□□□□ 0.05
SNX1-211ENST00000560829 COL1A1P02452 1464 aaPredicted RBP15.37■□□□□ 0.05
SNX1-211ENST00000560829 FGAP02671 866 aa15.36■□□□□ 0.05
SNX1-211ENST00000560829 RPGRQ92834 1020 aaKnown RBP15.36■□□□□ 0.05
SNX1-211ENST00000560829 LEMD3Q9Y2U8 911 aa15.36■□□□□ 0.05
SNX1-211ENST00000560829 E7EWF7 191 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 LARGE1O95461 756 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 TOB2Q14106 344 aaPredicted RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 IMMTQ16891 758 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 MAGEB6Q8N7X4 407 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 RBM17Q96I25 401 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 GBP4Q96PP9 640 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 STRBPQ96SI9 672 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 DOCK2Q92608 1830 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 ZMYM6O95789 1325 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 HIBADHP31937 336 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 TTLL5Q6EMB2 1281 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 C15orf52Q6ZUT6 534 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 DHX32Q7L7V1 743 aaKnown RBP15.35■□□□□ 0.05
SNX1-211ENST00000560829 VPS37DQ86XT2 251 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 CRAMP1Q96RY5 1269 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 TPCN1Q9ULQ1 816 aa15.35■□□□□ 0.05
SNX1-211ENST00000560829 PNPLA7Q6ZV29 1317 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 TAF1P21675 1872 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 BBOX1O75936 387 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 KLRK1P26718 216 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 EXOSC10Q01780 885 aaKnown RBP15.34■□□□□ 0.05
SNX1-211ENST00000560829 ALX1Q15699 326 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 ME3Q16798 604 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 AIDAQ96BJ3 306 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 AGXT2Q9BYV1 514 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 LRP2BPQ9P2M1 347 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 ZDHHC9Q9Y397 364 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 XDHP47989 1333 aa15.34■□□□□ 0.05
SNX1-211ENST00000560829 DDX11L8A8MPP1 907 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 IGSF3O75054 1194 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 BRD1O95696 1058 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 PKP1Q13835 747 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 TMED8Q6PL24 325 aaPredicted RBP15.33■□□□□ 0.05
SNX1-211ENST00000560829 FBXL16Q8N461 479 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 BRIP1Q9BX63 1249 aa15.33■□□□□ 0.05
SNX1-211ENST00000560829 MYH7P12883 1935 aa15.33■□□□□ 0.04
SNX1-211ENST00000560829 A0A0G2JLW4 131 aa15.33■□□□□ 0.04
SNX1-211ENST00000560829 ST3GAL1Q11201 340 aa15.33■□□□□ 0.04
SNX1-211ENST00000560829 TMC4Q7Z404 712 aa15.33■□□□□ 0.04
SNX1-211ENST00000560829 TCEANC2Q96MN5 208 aa15.33■□□□□ 0.04
SNX1-211ENST00000560829 LARP6Q9BRS8 491 aaKnown RBP15.33■□□□□ 0.04
SNX1-211ENST00000560829 IQSEC3Q9UPP2 1182 aaPredicted RBP15.33■□□□□ 0.04
SNX1-211ENST00000560829 NRXN2Q9P2S2 1712 aa15.32■□□□□ 0.04
SNX1-211ENST00000560829 GNAT2P19087 354 aa15.32■□□□□ 0.04
SNX1-211ENST00000560829 PATL2C9JE40 543 aaKnown RBP15.31■□□□□ 0.04
SNX1-211ENST00000560829 ZNF213O14771 459 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 MBD4O95243 580 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 Q6ZUG5 572 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 CAMKK2Q96RR4 588 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 PODXL2Q9NZ53 605 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 ANKIB1Q9P2G1 1089 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 PTMSP20962 102 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 TXNRD3Q86VQ6 643 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 CCDC83Q8IWF9 413 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 ABCF2Q9UG63 623 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 SMC3Q9UQE7 1217 aa15.31■□□□□ 0.04
SNX1-211ENST00000560829 BAG4O95429 457 aaKnown RBP15.3■□□□□ 0.04
SNX1-211ENST00000560829 ATP2B4P23634 1241 aa15.3■□□□□ 0.04
SNX1-211ENST00000560829 RAI14Q9P0K7 980 aa15.3■□□□□ 0.04
SNX1-211ENST00000560829 WDR19Q8NEZ3 1342 aa15.3■□□□□ 0.04
SNX1-211ENST00000560829 CYP7A1P22680 504 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 GPSM2P81274 684 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 IFNL3Q8IZI9 196 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 ARMT1Q9H993 441 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 EPB41L4AQ9HCS5 686 aaPredicted RBP15.29■□□□□ 0.04
SNX1-211ENST00000560829 SALL1Q9NSC2 1324 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 GSG1L2A8MUP6 293 aa15.29■□□□□ 0.04
SNX1-211ENST00000560829 MMP10P09238 476 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms