RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZKSCAN1P17029 563 aaPredicted RBP21.3■■□□□ 1
SNX1-208ENST00000559844 NECTIN1Q15223 517 aa21.3■■□□□ 1
SNX1-208ENST00000559844 CC2D2BQ6DHV5 1058 aa21.3■■□□□ 1
SNX1-208ENST00000559844 FER1L6Q2WGJ9 1857 aa21.3■■□□□ 1
SNX1-208ENST00000559844 KCNJ4P48050 445 aa21.29■■□□□ 1
SNX1-208ENST00000559844 CCDC93Q567U6 631 aa21.29■■□□□ 1
SNX1-208ENST00000559844 SOGA3Q5TF21 947 aa21.29■■□□□ 1
SNX1-208ENST00000559844 RASEFQ8IZ41 740 aa21.29■■□□□ 1
SNX1-208ENST00000559844 RBM8AQ9Y5S9 174 aaKnown RBP21.29■■□□□ 1
SNX1-208ENST00000559844 TIMM10P62072 90 aa21.28■■□□□ 1
SNX1-208ENST00000559844 RNF20Q5VTR2 975 aa21.28■■□□□ 1
SNX1-208ENST00000559844 DPP8Q6V1X1 898 aaPredicted RBP21.28■■□□□ 1
SNX1-208ENST00000559844 MPNDQ8N594 471 aa21.28■■□□□ 1
SNX1-208ENST00000559844 DUOX1Q9NRD9 1551 aa21.28■■□□□ 1
SNX1-208ENST00000559844 SNED1Q8TER0 1413 aa21.28■■□□□ 1
SNX1-208ENST00000559844 KBTBD3Q8NAB2 608 aa21.28■■□□□ 1
SNX1-208ENST00000559844 SNAP23O00161 211 aa21.27■■□□□ 1
SNX1-208ENST00000559844 CYP2E1P05181 493 aaPredicted RBP21.27■■□□□ 1
SNX1-208ENST00000559844 ZGPATQ8N5A5 531 aaKnown RBP21.27■■□□□ 1
SNX1-208ENST00000559844 EDC3Q96F86 508 aaKnown RBP21.27■■□□□ 1
SNX1-208ENST00000559844 TTC14Q96N46 770 aa21.27■■□□□ 1
SNX1-208ENST00000559844 PODXL2Q9NZ53 605 aa21.27■■□□□ 1
SNX1-208ENST00000559844 WTIPA6NIX2 430 aaPredicted RBP21.27■□□□□ 0.99
SNX1-208ENST00000559844 GOLGA6L22H0YM25 854 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 UFL1O94874 794 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 PUM3Q15397 648 aaKnown RBP21.27■□□□□ 0.99
SNX1-208ENST00000559844 CCDC158Q5M9N0 1113 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 RTKN2Q8IZC4 609 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 PAG1Q9NWQ8 432 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 GGA1Q9UJY5 639 aa21.27■□□□□ 0.99
SNX1-208ENST00000559844 IFIT1P09914 478 aaKnown RBP21.26■□□□□ 0.99
SNX1-208ENST00000559844 YBX3P16989 372 aaKnown RBP eCLIP21.26■□□□□ 0.99
SNX1-208ENST00000559844 CREB3L3Q68CJ9 461 aa21.26■□□□□ 0.99
SNX1-208ENST00000559844 ARAP2Q8WZ64 1704 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 PSMA5P28066 241 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 ATP2B3Q16720 1220 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 GRIPAP1Q4V328 841 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 TBC1D16Q8TBP0 767 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 ZSWIM6Q9HCJ5 1215 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 HMG20BQ9P0W2 317 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 POLLQ9UGP5 575 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 CYP46A1Q9Y6A2 500 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 ZNF804BA4D1E1 1349 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 C6orf229H3BNL8 230 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 TRAK2O60296 914 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 CASTP20810 708 aaKnown RBP21.25■□□□□ 0.99
SNX1-208ENST00000559844 ATP2B4P23634 1241 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 MCMDC2Q4G0Z9 681 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 VPS53Q5VIR6 699 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 JAKMIP1Q96N16 626 aaKnown RBP21.25■□□□□ 0.99
SNX1-208ENST00000559844 LEMD3Q9Y2U8 911 aa21.25■□□□□ 0.99
SNX1-208ENST00000559844 CCDC88AQ3V6T2 1871 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 SLC27A2O14975 620 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 UBE4AQ14139 1066 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 GPR162Q16538 588 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 SKOR2Q2VWA4 1001 aaPredicted RBP21.23■□□□□ 0.99
SNX1-208ENST00000559844 LRRFIP1Q32MZ4 808 aaKnown RBP21.23■□□□□ 0.99
SNX1-208ENST00000559844 GORABQ5T7V8 394 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 NOL8Q76FK4 1167 aaKnown RBP21.23■□□□□ 0.99
SNX1-208ENST00000559844 GPR101Q96P66 508 aaPredicted RBP21.23■□□□□ 0.99
SNX1-208ENST00000559844 HELLSQ9NRZ9 838 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 LIMCH1Q9UPQ0 1083 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 GOLIM4O00461 696 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 FGFR2P21802 821 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 TTC39AQ5SRH9 613 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 ZNF589Q86UQ0 364 aaPredicted RBP21.23■□□□□ 0.99
SNX1-208ENST00000559844 PDRG1Q9NUG6 133 aa21.23■□□□□ 0.99
SNX1-208ENST00000559844 SLC5A1P13866 664 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 AK2P54819 239 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 RUFY3Q7L099 469 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 LPIN2Q92539 896 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 XAGE2Q96GT9 111 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 NDUFB9Q9Y6M9 179 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 UTRNP46939 3433 aa21.22■□□□□ 0.99
SNX1-208ENST00000559844 BAG4O95429 457 aaKnown RBP21.21■□□□□ 0.99
SNX1-208ENST00000559844 KLRK1P26718 216 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 TSGA10IPQ3SY00 556 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 PSMD1Q99460 953 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 RTFDC1Q9BY42 306 aaPredicted RBP21.21■□□□□ 0.99
SNX1-208ENST00000559844 TAOK3Q9H2K8 898 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 U3KPZ7 1027 aaPredicted RBP21.21■□□□□ 0.99
SNX1-208ENST00000559844 RPAP1Q9BWH6 1393 aaPredicted RBP21.21■□□□□ 0.99
SNX1-208ENST00000559844 FKBP4Q02790 459 aaKnown RBP eCLIP21.21■□□□□ 0.99
SNX1-208ENST00000559844 ARHGAP27Q6ZUM4 889 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 SUPT20HQ8NEM7 779 aa21.21■□□□□ 0.99
SNX1-208ENST00000559844 ZSCAN31Q96LW9 406 aaPredicted RBP21.21■□□□□ 0.99
SNX1-208ENST00000559844 NFKBIEO00221 500 aa21.2■□□□□ 0.98
SNX1-208ENST00000559844 KRT32Q14532 448 aa21.2■□□□□ 0.98
SNX1-208ENST00000559844 ADCK5Q3MIX3 580 aa21.2■□□□□ 0.98
SNX1-208ENST00000559844 ADORA1P30542 326 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 WASHC4Q2M389 1173 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 TXNRD3Q86VQ6 643 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 EYA3Q99504 573 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 SBF1O95248 1867 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 RIMBP2O15034 1052 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 RASSF7Q02833 373 aa21.19■□□□□ 0.98
SNX1-208ENST00000559844 SH2B1Q9NRF2 756 aaPredicted RBP21.19■□□□□ 0.98
SNX1-208ENST00000559844 ZNF277Q9NRM2 450 aaPredicted RBP21.19■□□□□ 0.98
SNX1-208ENST00000559844 ZMYM1Q5SVZ6 1142 aa21.18■□□□□ 0.98
SNX1-208ENST00000559844 ZC3H12CQ9C0D7 883 aaKnown RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms