RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF532Q9HCE3 1301 aa15.15■□□□□ 0.02
USP3-213ENST00000559711 SEMA3EO15041 775 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 GPAA1O43292 621 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 RPS6KB1P23443 525 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 RAB3GAP1Q15042 981 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 PNPLA7Q6ZV29 1317 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 CAMKK2Q96RR4 588 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 CTNNA3Q9UI47 895 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 DENND2AQ9ULE3 1009 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 LEMD3Q9Y2U8 911 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 IRS2Q9Y4H2 1338 aa15.14■□□□□ 0.01
USP3-213ENST00000559711 PDS5AQ29RF7 1337 aaKnown RBP15.13■□□□□ 0.01
USP3-213ENST00000559711 FRAT2O75474 233 aaPredicted RBP15.13■□□□□ 0.01
USP3-213ENST00000559711 BBOX1O75936 387 aa15.13■□□□□ 0.01
USP3-213ENST00000559711 VPS37DQ86XT2 251 aa15.13■□□□□ 0.01
USP3-213ENST00000559711 ZGPATQ8N5A5 531 aaKnown RBP15.13■□□□□ 0.01
USP3-213ENST00000559711 NEK1Q96PY6 1258 aa15.13■□□□□ 0.01
USP3-213ENST00000559711 CRAMP1Q96RY5 1269 aa15.13■□□□□ 0.01
USP3-213ENST00000559711 HIBADHP31937 336 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 COL9A3Q14050 684 aaPredicted RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 NOL8Q76FK4 1167 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 ZSCAN31Q96LW9 406 aaPredicted RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 BRIP1Q9BX63 1249 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 TNS1Q9HBL0 1735 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 RGPD3A6NKT7 1758 aaPredicted RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 RGPD4Q7Z3J3 1758 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 XDHP47989 1333 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 FGAP02671 866 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 HMGB1P09429 215 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 KLRK1P26718 216 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 NUCB2P80303 420 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 ANKRD1Q15327 319 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 C15orf52Q6ZUT6 534 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 MAGEB6Q8N7X4 407 aa15.12■□□□□ 0.01
USP3-213ENST00000559711 STRBPQ96SI9 672 aaKnown RBP15.12■□□□□ 0.01
USP3-213ENST00000559711 TAF1P21675 1872 aa15.11■□□□□ 0.01
USP3-213ENST00000559711 CASZ1Q86V15 1759 aa15.11■□□□□ 0.01
USP3-213ENST00000559711 STOX1Q6ZVD7 989 aa15.11■□□□□ 0.01
USP3-213ENST00000559711 SH2B1Q9NRF2 756 aaPredicted RBP15.11■□□□□ 0.01
USP3-213ENST00000559711 ANKIB1Q9P2G1 1089 aa15.11■□□□□ 0.01
USP3-213ENST00000559711 LRP2BPQ9P2M1 347 aa15.11■□□□□ 0.01
USP3-213ENST00000559711 IQSEC3Q9UPP2 1182 aaPredicted RBP15.11■□□□□ 0.01
USP3-213ENST00000559711 EN1Q05925 392 aaPredicted RBP15.1■□□□□ 0.01
USP3-213ENST00000559711 ALX1Q15699 326 aa15.1■□□□□ 0.01
USP3-213ENST00000559711 EZH2Q15910 746 aaKnown RBP15.1■□□□□ 0.01
USP3-213ENST00000559711 TTLL5Q6EMB2 1281 aa15.1■□□□□ 0.01
USP3-213ENST00000559711 TMC4Q7Z404 712 aa15.1■□□□□ 0.01
USP3-213ENST00000559711 A0A1B0GUL6 1792 aa15.1■□□□□ 0.01
USP3-213ENST00000559711 COL1A1P02452 1464 aaPredicted RBP15.1■□□□□ 0.01
USP3-213ENST00000559711 E7EWF7 191 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 MMP10P09238 476 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 SLC15A2Q16348 729 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 IMMTQ16891 758 aaKnown RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 TXNRD3Q86VQ6 643 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 TNPO1Q92973 898 aaKnown RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 AIDAQ96BJ3 306 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 A0A0G2JLW4 131 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 GPSM2P81274 684 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 EXOSC10Q01780 885 aaKnown RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 TOB2Q14106 344 aaPredicted RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 CLEC17AQ6ZS10 378 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 DHX32Q7L7V1 743 aaKnown RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 LARP6Q9BRS8 491 aaKnown RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 ANO8Q9HCE9 1232 aaPredicted RBP15.09■□□□□ 0.01
USP3-213ENST00000559711 PODXL2Q9NZ53 605 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 TPCN1Q9ULQ1 816 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 PARP3Q9Y6F1 533 aa15.09■□□□□ 0.01
USP3-213ENST00000559711 ZMYM6O95789 1325 aa15.08■□□□□ 0
USP3-213ENST00000559711 PATL2C9JE40 543 aaKnown RBP15.08■□□□□ 0
USP3-213ENST00000559711 IGSF3O75054 1194 aa15.08■□□□□ 0
USP3-213ENST00000559711 ATP2B4P23634 1241 aa15.08■□□□□ 0
USP3-213ENST00000559711 MCM4P33991 863 aa15.08■□□□□ 0
USP3-213ENST00000559711 TMED8Q6PL24 325 aaPredicted RBP15.08■□□□□ 0
USP3-213ENST00000559711 SLC51AQ86UW1 340 aa15.08■□□□□ 0
USP3-213ENST00000559711 MBD4O95243 580 aa15.07■□□□□ 0
USP3-213ENST00000559711 LARGE1O95461 756 aa15.07■□□□□ 0
USP3-213ENST00000559711 SRGNP10124 158 aa15.07■□□□□ 0
USP3-213ENST00000559711 GNAT2P19087 354 aa15.07■□□□□ 0
USP3-213ENST00000559711 PDE6BP35913 854 aa15.07■□□□□ 0
USP3-213ENST00000559711 ME3Q16798 604 aa15.07■□□□□ 0
USP3-213ENST00000559711 STK32BQ9NY57 414 aa15.07■□□□□ 0
USP3-213ENST00000559711 ABCF2Q9UG63 623 aa15.07■□□□□ 0
USP3-213ENST00000559711 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.07■□□□□ 0
USP3-213ENST00000559711 NRXN2Q9P2S2 1712 aa15.07■□□□□ 0
USP3-213ENST00000559711 ZNF213O14771 459 aa15.06■□□□□ 0
USP3-213ENST00000559711 NPR1P16066 1061 aa15.06■□□□□ 0
USP3-213ENST00000559711 CYP7A1P22680 504 aa15.06■□□□□ 0
USP3-213ENST00000559711 SP8Q8IXZ3 490 aa15.06■□□□□ 0
USP3-213ENST00000559711 FBXL16Q8N461 479 aa15.06■□□□□ 0
USP3-213ENST00000559711 TDRD7Q8NHU6 1098 aaKnown RBP15.06■□□□□ 0
USP3-213ENST00000559711 TCEANC2Q96MN5 208 aa15.06■□□□□ 0
USP3-213ENST00000559711 AGXT2Q9BYV1 514 aa15.06■□□□□ 0
USP3-213ENST00000559711 RAI14Q9P0K7 980 aa15.06■□□□□ 0
USP3-213ENST00000559711 NSFL1CQ9UNZ2 370 aaKnown RBP15.06■□□□□ 0
USP3-213ENST00000559711 DOCK2Q92608 1830 aa15.06■□□□□ 0
USP3-213ENST00000559711 Q6ZUG5 572 aa15.06■□□□□ 0
USP3-213ENST00000559711 ARMT1Q9H993 441 aa15.06■□□□□ 0
USP3-213ENST00000559711 GGA1Q9UJY5 639 aa15.06■□□□□ 0
USP3-213ENST00000559711 ZDHHC9Q9Y397 364 aa15.06■□□□□ 0
USP3-213ENST00000559711 SALL1Q9NSC2 1324 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 156.6 ms