RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 LRRFIP1Q32MZ4 808 aaKnown RBP13.07□□□□□ -0.32
SPG11-217ENST00000559511 MEX3CQ5U5Q3 659 aaKnown RBP13.07□□□□□ -0.32
SPG11-217ENST00000559511 CHST3Q7LGC8 479 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 GJD4Q96KN9 370 aaPredicted RBP13.07□□□□□ -0.32
SPG11-217ENST00000559511 CNTNAP4Q9C0A0 1308 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 PDE8BO95263 885 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 SMARCC2Q8TAQ2 1214 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 APPBP2Q92624 585 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 AFF2P51816 1311 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 CTDNEP1O95476 244 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 HAND2P61296 217 aa13.06□□□□□ -0.32
SPG11-217ENST00000559511 NSUN7Q8NE18 718 aaKnown RBP13.06□□□□□ -0.32
SPG11-217ENST00000559511 ELP1O95163 1332 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 COL4A1P02462 1669 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 C4AP0C0L4 1744 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 C4BP0C0L5 1744 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 FGAP02671 866 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 CLEC4GQ6UXB4 293 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 ZNF512BQ96KM6 892 aaPredicted RBP13.05□□□□□ -0.32
SPG11-217ENST00000559511 LLPHQ9BRT6 129 aaKnown RBP13.05□□□□□ -0.32
SPG11-217ENST00000559511 ZNF652Q9Y2D9 606 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 COL24A1Q17RW2 1714 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 ATRNO75882 1429 aa13.05□□□□□ -0.32
SPG11-217ENST00000559511 BRWD3Q6RI45 1802 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 GPAA1O43292 621 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 PHKA1P46020 1223 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 CCT2P78371 535 aaKnown RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 RESTQ13127 1097 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 SMIM5Q71RC9 77 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 NCOA5Q9HCD5 579 aaKnown RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 SEC31BQ9NQW1 1179 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 TFIP11Q9UBB9 837 aaKnown RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 DOCK2Q92608 1830 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 LETM1O95202 739 aaPredicted RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 IMMTQ16891 758 aaKnown RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 CCDC102BQ68D86 513 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 GIMAP6Q6P9H5 292 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 HELBQ8NG08 1087 aaPredicted RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 PIH1D3Q9NQM4 214 aaKnown RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 GPHNQ9NQX3 736 aaPredicted RBP13.04□□□□□ -0.32
SPG11-217ENST00000559511 CTNNA3Q9UI47 895 aa13.04□□□□□ -0.32
SPG11-217ENST00000559511 PTPDC1A2A3K4 754 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 ONECUT3O60422 494 aaPredicted RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 PDIA3P30101 505 aaKnown RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 ADD2P35612 726 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 RC3H1Q5TC82 1133 aaKnown RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 FAM184AQ8NB25 1140 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 FUCA2Q9BTY2 467 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.03□□□□□ -0.326e-6■■■□□ 19.2
SPG11-217ENST00000559511 SALL1Q9NSC2 1324 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 RTL9Q8NET4 1388 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 H3BQV1 296 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 FGFR2P21802 821 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 ARID4AP29374 1257 aaPredicted RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 PUM3Q15397 648 aaKnown RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 SLC9C2Q5TAH2 1124 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 IFFO2Q5TF58 517 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 FBXL16Q8N461 479 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 LEO1Q8WVC0 666 aaPredicted RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 SPATA32Q96LK8 384 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 SCAND2PQ9GZW5 306 aaPredicted RBP13.03□□□□□ -0.32
SPG11-217ENST00000559511 BCL2L12Q9HB09 334 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 MROH5Q6ZUA9 1318 aa13.03□□□□□ -0.32
SPG11-217ENST00000559511 SNAP23O00161 211 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 PPFIA3O75145 1194 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 RPS6KA4O75676 772 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 LIG1P18858 919 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 FOSBP53539 338 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 CCDC152Q4G0S7 254 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 ZSCAN30Q86W11 494 aa13.02□□□□□ -0.33
SPG11-217ENST00000559511 MB21D2Q8IYB1 491 aaPredicted RBP13.02□□□□□ -0.33
SPG11-217ENST00000559511 ZNF274Q96GC6 653 aaPredicted RBP13.02□□□□□ -0.33
SPG11-217ENST00000559511 NAP1L2Q9ULW6 460 aaPredicted RBP13.02□□□□□ -0.33
SPG11-217ENST00000559511 CHD4Q14839 1912 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 IDH1O75874 414 aaKnown RBP13.01□□□□□ -0.33
SPG11-217ENST00000559511 EVCP57679 992 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 TTF1Q15361 905 aaPredicted RBP13.01□□□□□ -0.33
SPG11-217ENST00000559511 HS1BP3Q53T59 392 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 LPIN2Q92539 896 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 NBPF3Q9H094 633 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 CCNL1Q9UK58 526 aaPredicted RBP13.01□□□□□ -0.33
SPG11-217ENST00000559511 RGL2O15211 777 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 HMGN5P82970 282 aaKnown RBP13.01□□□□□ -0.33
SPG11-217ENST00000559511 ERFEQ4G0M1 354 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 ZSCAN25Q6NSZ9 544 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 FBXO41Q8TF61 875 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 MPHOSPH8Q99549 860 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 TRPC5Q9UL62 973 aaPredicted RBP13.01□□□□□ -0.33
SPG11-217ENST00000559511 WWC3Q9ULE0 1092 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 ZNF532Q9HCE3 1301 aa13.01□□□□□ -0.33
SPG11-217ENST00000559511 ZNF213O14771 459 aa13□□□□□ -0.33
SPG11-217ENST00000559511 GNPATO15228 680 aa13□□□□□ -0.33
SPG11-217ENST00000559511 PRC1O43663 620 aa13□□□□□ -0.33
SPG11-217ENST00000559511 PDE6AP16499 860 aa13□□□□□ -0.33
SPG11-217ENST00000559511 ANTXR2P58335 489 aa13□□□□□ -0.33
SPG11-217ENST00000559511 UBE3CQ15386 1083 aa13□□□□□ -0.33
SPG11-217ENST00000559511 TBC1D9BQ66K14 1250 aa13□□□□□ -0.33
SPG11-217ENST00000559511 NAA16Q6N069 864 aaPredicted RBP13□□□□□ -0.33
SPG11-217ENST00000559511 SEPT12Q8IYM1 358 aa13□□□□□ -0.33
SPG11-217ENST00000559511 PGBD1Q96JS3 809 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms