RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 TRPM7Q96QT4 1865 aa12.05□□□□□ -0.48
SPG11-214ENST00000558989 USP17L3A6NCW0 530 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 USP17L4A6NCW7 530 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 GTF2IP78347 998 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 USP17L1Q7RTZ2 530 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 ITPRIPQ8IWB1 547 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 TRAF5O00463 557 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 SEMA3EO15041 775 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 VIL1P09327 827 aaKnown RBP12.04□□□□□ -0.48
SPG11-214ENST00000558989 RLBP1P12271 317 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 GYG1P46976 350 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 HIRAP54198 1017 aaPredicted RBP12.04□□□□□ -0.48
SPG11-214ENST00000558989 RSBN1LQ6PCB5 846 aaPredicted RBP12.04□□□□□ -0.48
SPG11-214ENST00000558989 USP50Q70EL3 339 aaPredicted RBP12.04□□□□□ -0.48
SPG11-214ENST00000558989 PODNQ7Z5L7 613 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 IQSEC3Q9UPP2 1182 aaPredicted RBP12.04□□□□□ -0.48
SPG11-214ENST00000558989 RIPOR2Q9Y4F9 1068 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 CEP350Q5VT06 3117 aa12.04□□□□□ -0.48
SPG11-214ENST00000558989 RFX5P48382 616 aaPredicted RBP12.03□□□□□ -0.48
SPG11-214ENST00000558989 TTLL5Q6EMB2 1281 aa12.03□□□□□ -0.48
SPG11-214ENST00000558989 DLK2Q6UY11 383 aa12.03□□□□□ -0.48
SPG11-214ENST00000558989 DZIP1LQ8IYY4 767 aaKnown RBP12.03□□□□□ -0.48
SPG11-214ENST00000558989 PANK1Q8TE04 598 aa12.03□□□□□ -0.48
SPG11-214ENST00000558989 CD209Q9NNX6 404 aa12.03□□□□□ -0.48
SPG11-214ENST00000558989 SCAF8Q9UPN6 1271 aaKnown RBP12.03□□□□□ -0.48
SPG11-214ENST00000558989 F8W031 263 aaPredicted RBP12.02□□□□□ -0.48
SPG11-214ENST00000558989 GNAI3P08754 354 aa12.02□□□□□ -0.48
SPG11-214ENST00000558989 PTPN12Q05209 780 aaKnown RBP12.02□□□□□ -0.48
SPG11-214ENST00000558989 ZNF804AQ7Z570 1209 aa12.02□□□□□ -0.48
SPG11-214ENST00000558989 GLIS2Q9BZE0 524 aaPredicted RBP12.02□□□□□ -0.48
SPG11-214ENST00000558989 ZNF408Q9H9D4 720 aa12.02□□□□□ -0.48
SPG11-214ENST00000558989 ASTN2O75129 1339 aaPredicted RBP12.02□□□□□ -0.49
SPG11-214ENST00000558989 MROH5Q6ZUA9 1318 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 EYA2O00167 538 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 SRGAP3O43295 1099 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 ITGBL1O95965 494 aaPredicted RBP12.02□□□□□ -0.49
SPG11-214ENST00000558989 BRD2P25440 801 aaKnown RBP12.02□□□□□ -0.49
SPG11-214ENST00000558989 KIF4BQ2VIQ3 1234 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 KIAA0825Q8IV33 1275 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 DPF2Q92785 391 aa12.02□□□□□ -0.49
SPG11-214ENST00000558989 RPS12P25398 132 aaKnown RBP12.01□□□□□ -0.49
SPG11-214ENST00000558989 DACT2Q5SW24 774 aa12.01□□□□□ -0.49
SPG11-214ENST00000558989 VPS37DQ86XT2 251 aa12.01□□□□□ -0.49
SPG11-214ENST00000558989 MKRN1Q9UHC7 482 aaKnown RBP12.01□□□□□ -0.49
SPG11-214ENST00000558989 IRS2Q9Y4H2 1338 aa12.01□□□□□ -0.49
SPG11-214ENST00000558989 FRAT2O75474 233 aaPredicted RBP12□□□□□ -0.49
SPG11-214ENST00000558989 GNAI2P04899 355 aa12□□□□□ -0.49
SPG11-214ENST00000558989 USP17L8P0C7I0 530 aa12□□□□□ -0.49
SPG11-214ENST00000558989 CHAF1AQ13111 956 aaPredicted RBP12□□□□□ -0.49
SPG11-214ENST00000558989 UBE4AQ14139 1066 aa12□□□□□ -0.49
SPG11-214ENST00000558989 USP48Q86UV5 1035 aa12□□□□□ -0.49
SPG11-214ENST00000558989 AGBL3Q8NEM8 1001 aa12□□□□□ -0.49
SPG11-214ENST00000558989 RCAN3Q9UKA8 241 aa12□□□□□ -0.49
SPG11-214ENST00000558989 HDAC5Q9UQL6 1122 aa12□□□□□ -0.49
SPG11-214ENST00000558989 PASKQ96RG2 1323 aa12□□□□□ -0.49
SPG11-214ENST00000558989 PDE8BO95263 885 aa12□□□□□ -0.49
SPG11-214ENST00000558989 HIBADHP31937 336 aaKnown RBP12□□□□□ -0.49
SPG11-214ENST00000558989 GRM1Q13255 1194 aa12□□□□□ -0.49
SPG11-214ENST00000558989 STRIP1Q5VSL9 837 aa12□□□□□ -0.49
SPG11-214ENST00000558989 ATG9AQ7Z3C6 839 aa12□□□□□ -0.49
SPG11-214ENST00000558989 FAM84BQ96KN1 310 aaPredicted RBP12□□□□□ -0.49
SPG11-214ENST00000558989 PNMA6EA0A0J9YXQ4 647 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 ADM5C9JUS6 153 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 SASH1O94885 1247 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 BCAMP50895 628 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 SCARF1Q14162 830 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 VGLL2Q8N8G2 317 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 MYOZ2Q9NPC6 264 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 GGA3Q9NZ52 723 aa11.99□□□□□ -0.49
SPG11-214ENST00000558989 ABT1Q9ULW3 272 aaKnown RBP11.99□□□□□ -0.49
SPG11-214ENST00000558989 TMEM88BA6NKF7 163 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 OGFOD1Q8N543 542 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 CERS5Q8N5B7 392 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 DCPSQ96C86 337 aaKnown RBP11.98□□□□□ -0.49
SPG11-214ENST00000558989 GMLQ99445 158 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 CEP126Q9P2H0 1117 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 COG6Q9Y2V7 657 aa11.98□□□□□ -0.49
SPG11-214ENST00000558989 IFIT1P09914 478 aaKnown RBP11.97□□□□□ -0.49
SPG11-214ENST00000558989 IL1R1P14778 569 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 PUM3Q15397 648 aaKnown RBP11.97□□□□□ -0.49
SPG11-214ENST00000558989 NBPF9Q3BBW0 867 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 CAVIN4Q5BKX8 364 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 ANGEL2Q5VTE6 544 aaKnown RBP11.97□□□□□ -0.49
SPG11-214ENST00000558989 C15orf52Q6ZUT6 534 aaKnown RBP11.97□□□□□ -0.49
SPG11-214ENST00000558989 DNAJC5GQ8N7S2 189 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 BCL11AQ9H165 835 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 PCDHAC2Q9Y5I4 1007 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 CELF2O95319 508 aaKnown RBP11.97□□□□□ -0.49
SPG11-214ENST00000558989 SLC5A1P13866 664 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 RBM5P52756 815 aaKnown RBP eCLIP11.97□□□□□ -0.49
SPG11-214ENST00000558989 GSE1Q14687 1217 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 SMYD5Q6GMV2 418 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 KRT26Q7Z3Y9 468 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 KLRG1Q96E93 195 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
SPG11-214ENST00000558989 IL15P40933 162 aaPredicted RBP11.96□□□□□ -0.49
SPG11-214ENST00000558989 ZNF280AP59817 542 aaPredicted RBP11.96□□□□□ -0.49
SPG11-214ENST00000558989 TFCP2Q12800 502 aa11.96□□□□□ -0.49
SPG11-214ENST00000558989 ATP2B3Q16720 1220 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms