RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 PTPN22Q9Y2R2 807 aa6.73□□□□□ -1.33
SPG11-208ENST00000558155 LAS1LQ9Y4W2 734 aaKnown RBP6.73□□□□□ -1.33
SPG11-208ENST00000558155 ZNF609O15014 1411 aa6.73□□□□□ -1.33
SPG11-208ENST00000558155 KIAA0100Q14667 2235 aaKnown RBP6.73□□□□□ -1.33
SPG11-208ENST00000558155 MYO3BQ8WXR4 1341 aa6.73□□□□□ -1.33
SPG11-208ENST00000558155 UNCXA6NJT0 531 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 HOXB7P09629 217 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 ZBTB48P10074 688 aaPredicted RBP6.72□□□□□ -1.33
SPG11-208ENST00000558155 EN2P19622 333 aaPredicted RBP6.72□□□□□ -1.33
SPG11-208ENST00000558155 TMPOP42166 694 aaKnown RBP6.72□□□□□ -1.33
SPG11-208ENST00000558155 FXR1P51114 621 aaKnown RBP eCLIP6.72□□□□□ -1.33
SPG11-208ENST00000558155 STRIP1Q5VSL9 837 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 TTLL5Q6EMB2 1281 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 NBPF11Q86T75 865 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 CCDC191Q8NCU4 936 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 ARMC5Q96C12 935 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 COA1Q9GZY4 146 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 EFCC1Q9HA90 598 aa6.72□□□□□ -1.33
SPG11-208ENST00000558155 TNRC18O15417 2968 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 PCCAP05165 728 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 SP3Q02447 781 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 GOLGA2Q08379 1002 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 NEUROD2Q15784 382 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 MAP3K11Q16584 847 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 SUPT20HL1Q3ZLR7 823 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 DACT2Q5SW24 774 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 PDCD7Q8N8D1 485 aaKnown RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 CD99L2Q8TCZ2 262 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 CCDC85AQ96PX6 553 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 CDC5LQ99459 802 aaKnown RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 BSDC1Q9NW68 430 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 ZBTB47Q9UFB7 747 aaPredicted RBP6.71□□□□□ -1.34
SPG11-208ENST00000558155 PSME4Q14997 1843 aa6.71□□□□□ -1.34
SPG11-208ENST00000558155 MYO1BO43795 1136 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 SASH1O94885 1247 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 IREB2P48200 963 aaKnown RBP6.7□□□□□ -1.34
SPG11-208ENST00000558155 CCT4P50991 539 aaKnown RBP6.7□□□□□ -1.34
SPG11-208ENST00000558155 DLGAP5Q15398 846 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 KRT24Q2M2I5 525 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 SLC4A8Q2Y0W8 1093 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 DUSP27Q5VZP5 1158 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 WNK4Q96J92 1243 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 MYD88Q99836 296 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 MXD3Q9BW11 206 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 CHMP4AQ9BY43 222 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 DEFB129Q9H1M3 183 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 CWC25Q9NXE8 425 aaPredicted RBP6.7□□□□□ -1.34
SPG11-208ENST00000558155 MINPP1Q9UNW1 487 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 LEMD3Q9Y2U8 911 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 PPP2R3BQ9Y5P8 575 aa6.7□□□□□ -1.34
SPG11-208ENST00000558155 MED23Q9ULK4 1368 aa6.69□□□□□ -1.34
SPG11-208ENST00000558155 IGF2BP3O00425 579 aaKnown RBP eCLIP6.69□□□□□ -1.34
SPG11-208ENST00000558155 WDHD1O75717 1129 aaPredicted RBP6.69□□□□□ -1.34
SPG11-208ENST00000558155 DDX58O95786 925 aaKnown RBP6.69□□□□□ -1.34
SPG11-208ENST00000558155 CRHR2Q13324 411 aa6.69□□□□□ -1.34
SPG11-208ENST00000558155 KIAA0825Q8IV33 1275 aa6.69□□□□□ -1.34
SPG11-208ENST00000558155 JARID2Q92833 1246 aaPredicted RBP6.69□□□□□ -1.34
SPG11-208ENST00000558155 ZBED3Q96IU2 234 aaPredicted RBP6.69□□□□□ -1.34
SPG11-208ENST00000558155 ANKRD2Q9GZV1 360 aa6.69□□□□□ -1.34
SPG11-208ENST00000558155 TESPA1A2RU30 521 aaPredicted RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 WTIPA6NIX2 430 aaPredicted RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 DLL1O00548 723 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 IGHMBP2P38935 993 aaKnown RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 GTF2IP78347 998 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 SLC9C1Q4G0N8 1177 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 ANKRD13AQ8IZ07 590 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 MTMR14Q8NCE2 650 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 TTLL11Q8NHH1 800 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 ZNF333Q96JL9 665 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 CLMNQ96JQ2 1002 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 METTL22Q9BUU2 404 aaPredicted RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 KRTAP3-3Q9BYR6 98 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 PHAXQ9H814 394 aaKnown RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 ZFYVE28Q9HCC9 887 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.68□□□□□ -1.34
SPG11-208ENST00000558155 FZD1Q9UP38 647 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 ZNF804BA4D1E1 1349 aa6.68□□□□□ -1.34
SPG11-208ENST00000558155 RBBP6Q7Z6E9 1792 aaKnown RBP6.67□□□□□ -1.34
SPG11-208ENST00000558155 H0YGN5 161 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 USP2O75604 605 aaPredicted RBP6.67□□□□□ -1.34
SPG11-208ENST00000558155 KCNJ4P48050 445 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 CTSWP56202 376 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 KIF22Q14807 665 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 NBPF12Q5TAG4 269 aaPredicted RBP6.67□□□□□ -1.34
SPG11-208ENST00000558155 TXNRD3Q86VQ6 643 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 SLC17A8Q8NDX2 589 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 DPF3Q92784 378 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 RUNDC1Q96C34 613 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 MPHOSPH8Q99549 860 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 PTPN18Q99952 460 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 COL4A1P02462 1669 aa6.67□□□□□ -1.34
SPG11-208ENST00000558155 COL1A1P02452 1464 aaPredicted RBP6.66□□□□□ -1.34
SPG11-208ENST00000558155 ELL2O00472 640 aaPredicted RBP6.66□□□□□ -1.34
SPG11-208ENST00000558155 SNPHO15079 494 aa6.66□□□□□ -1.34
SPG11-208ENST00000558155 GNRH1P01148 92 aa6.66□□□□□ -1.34
SPG11-208ENST00000558155 GTF2A2P52657 109 aa6.66□□□□□ -1.34
SPG11-208ENST00000558155 RBM5P52756 815 aaKnown RBP eCLIP6.66□□□□□ -1.34
SPG11-208ENST00000558155 PRMT2P55345 433 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 219.8 ms