RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 USP2O75604 605 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-230ENST00000557427 HDGFL1Q5TGJ6 251 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 KIAA0825Q8IV33 1275 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 JARID2Q92833 1246 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-230ENST00000557427 MS4A4AQ96JQ5 239 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 ARHGAP39Q9C0H5 1083 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 IFT57Q9NWB7 429 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 MED23Q9ULK4 1368 aa15.97■□□□□ 0.15
SHMT2-230ENST00000557427 UNCXA6NJT0 531 aa15.96■□□□□ 0.15
SHMT2-230ENST00000557427 PPP1R12BO60237 982 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-230ENST00000557427 UBE2Q1Q7Z7E8 422 aa15.96■□□□□ 0.15
SHMT2-230ENST00000557427 COL1A1P02452 1464 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-230ENST00000557427 MTFR1Q15390 333 aa15.95■□□□□ 0.14
SHMT2-230ENST00000557427 CCDC152Q4G0S7 254 aa15.95■□□□□ 0.14
SHMT2-230ENST00000557427 NBPF12Q5TAG4 269 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-230ENST00000557427 ANKRD18AQ8IVF6 992 aa15.95■□□□□ 0.14
SHMT2-230ENST00000557427 BRI3BPQ8WY22 251 aa15.95■□□□□ 0.14
SHMT2-230ENST00000557427 AOX1Q06278 1338 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 MMP14P50281 582 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 TTLL5Q6EMB2 1281 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 WWC1Q8IX03 1113 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 C8orf58Q8NAV2 365 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 COA1Q9GZY4 146 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 MINPP1Q9UNW1 487 aa15.94■□□□□ 0.14
SHMT2-230ENST00000557427 PDE8AO60658 829 aa15.93■□□□□ 0.14
SHMT2-230ENST00000557427 KLRK1P26718 216 aa15.93■□□□□ 0.14
SHMT2-230ENST00000557427 FAM43AQ8N2R8 423 aa15.93■□□□□ 0.14
SHMT2-230ENST00000557427 CNKSR2Q8WXI2 1034 aa15.93■□□□□ 0.14
SHMT2-230ENST00000557427 OPTNQ96CV9 577 aa15.93■□□□□ 0.14
SHMT2-230ENST00000557427 DBF4Q9UBU7 674 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-230ENST00000557427 UNC80Q8N2C7 3258 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 ZBTB7BO15156 539 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-230ENST00000557427 HOXB7P09629 217 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 CCT4P50991 539 aaKnown RBP15.92■□□□□ 0.14
SHMT2-230ENST00000557427 TAF1CQ15572 869 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-230ENST00000557427 ANKRD13AQ8IZ07 590 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 TSR2Q969E8 191 aaKnown RBP15.92■□□□□ 0.14
SHMT2-230ENST00000557427 ELP3Q9H9T3 547 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 PPP2R3BQ9Y5P8 575 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 ZNF804BA4D1E1 1349 aa15.92■□□□□ 0.14
SHMT2-230ENST00000557427 OTOFQ9HC10 1997 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 CLRN2A0PK11 232 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 PCCAP05165 728 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-230ENST00000557427 IREB2P48200 963 aaKnown RBP15.91■□□□□ 0.14
SHMT2-230ENST00000557427 GTF2IP78347 998 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 ARHGEF6Q15052 776 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 DLGAP5Q15398 846 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 CCDC27Q2M243 656 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 SUPT20HL1Q3ZLR7 823 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 CERS5Q8N5B7 392 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 MTMR14Q8NCE2 650 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 ZFYVE28Q9HCC9 887 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 HYPKQ9NX55 129 aa15.91■□□□□ 0.14
SHMT2-230ENST00000557427 CTGFP29279 349 aa15.9■□□□□ 0.14
SHMT2-230ENST00000557427 LACTBP83111 547 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-230ENST00000557427 TSPYL6Q8N831 410 aa15.9■□□□□ 0.14
SHMT2-230ENST00000557427 PRMT6Q96LA8 375 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-230ENST00000557427 COL25A1Q9BXS0 654 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-230ENST00000557427 BSDC1Q9NW68 430 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-230ENST00000557427 CCL15-CCL14A0A0B4J2E2 113 aa15.89■□□□□ 0.13
SHMT2-230ENST00000557427 A0A1W2PPC1 479 aa15.89■□□□□ 0.13
SHMT2-230ENST00000557427 GJA8P48165 433 aa15.89■□□□□ 0.13
SHMT2-230ENST00000557427 CCL15Q16663 113 aa15.89■□□□□ 0.13
SHMT2-230ENST00000557427 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-230ENST00000557427 PHAXQ9H814 394 aaKnown RBP15.89■□□□□ 0.13
SHMT2-230ENST00000557427 CDAN1Q8IWY9 1227 aa15.88■□□□□ 0.13
SHMT2-230ENST00000557427 MYD88Q99836 296 aa15.88■□□□□ 0.13
SHMT2-230ENST00000557427 HTATIP2Q9BUP3 242 aa15.88■□□□□ 0.13
SHMT2-230ENST00000557427 STAP2Q9UGK3 403 aa15.88■□□□□ 0.13
SHMT2-230ENST00000557427 ECM29Q5VYK3 1845 aa15.88■□□□□ 0.13
SHMT2-230ENST00000557427 SPEF2Q9C093 1822 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 SPDYE2BA6NHP3 402 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 TLR2O60603 784 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 ECM2O94769 699 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-230ENST00000557427 SPDYE6P0CI01 402 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 HSP90B1P14625 803 aaKnown RBP15.87■□□□□ 0.13
SHMT2-230ENST00000557427 RASA3Q14644 834 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 CFAP100Q494V2 611 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 CCDC191Q8NCU4 936 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 TTLL11Q8NHH1 800 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 GREM2Q9H772 168 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 NR2E3Q9Y5X4 410 aa15.87■□□□□ 0.13
SHMT2-230ENST00000557427 GJB1P08034 283 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 CTSWP56202 376 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 CCDC30Q5VVM6 783 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 Q7L0L9 218 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 CDC5LQ99459 802 aaKnown RBP15.86■□□□□ 0.13
SHMT2-230ENST00000557427 VEZTQ9HBM0 779 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 LEMD3Q9Y2U8 911 aa15.86■□□□□ 0.13
SHMT2-230ENST00000557427 F8W031 263 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-230ENST00000557427 CCL5P13501 91 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 GTF2A2P52657 109 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 VGLL4Q14135 290 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 WDR63Q8IWG1 891 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 NKX2-3Q8TAU0 364 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 TEPSINQ96N21 525 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 CD209Q9NNX6 404 aa15.85■□□□□ 0.13
SHMT2-230ENST00000557427 GNRH1P01148 92 aa15.84■□□□□ 0.13
SHMT2-230ENST00000557427 PRMT2P55345 433 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms