RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CDHR2Q9BYE9 1310 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 MADDQ8WXG6 1647 aa15.81■□□□□ 0.12
SHMT2-226ENST00000556825 PYGBP11216 843 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 KRT85P78386 507 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 PLCB4Q15147 1175 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 NUTM2GQ5VZR2 741 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 SPATA21Q7Z572 469 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 ZNF396Q96N95 335 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-226ENST00000556825 VIPAS39Q9H9C1 493 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.8■□□□□ 0.12
SHMT2-226ENST00000556825 SYF2O95926 243 aaKnown RBP15.8■□□□□ 0.12
SHMT2-226ENST00000556825 IBSPP21815 317 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-226ENST00000556825 TUBB4BP68371 445 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 SNCBQ16143 134 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 C11orf57Q6ZUT1 292 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-226ENST00000556825 SUGCTQ9HAC7 445 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 NPHP3Q7Z494 1330 aa15.8■□□□□ 0.12
SHMT2-226ENST00000556825 ZSCAN9O15535 394 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 MEFVO15553 781 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 AHCYL1O43865 530 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 LAMB3Q13751 1172 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 BCAS4Q8TDM0 211 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 TBC1D5Q92609 795 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 SMARCC1Q92922 1105 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 RSRC1Q96IZ7 334 aaKnown RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 UPF3BQ9BZI7 483 aaKnown RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 ZSCAN12O43309 604 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 FESP07332 822 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 CCDC40Q4G0X9 1142 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 MYLK4Q86YV6 388 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-226ENST00000556825 SLX1AQ9BQ83 275 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 KAT14Q9H8E8 782 aa15.79■□□□□ 0.12
SHMT2-226ENST00000556825 GOLGA6L4A6NEF3 574 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 CHMP4BP1P59074 171 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 STX1AQ16623 288 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 KIF4BQ2VIQ3 1234 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 FCHSD1Q86WN1 690 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 MFN1Q8IWA4 741 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 DHX40Q8IX18 779 aaKnown RBP15.78■□□□□ 0.12
SHMT2-226ENST00000556825 ABCA6Q8N139 1617 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 OTUD7AQ8TE49 926 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-226ENST00000556825 PNKPQ96T60 521 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 PIK3R4Q99570 1358 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 TTC21AQ8NDW8 1320 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 OATP04181 439 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 POLD1P28340 1107 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 CDR1P51861 262 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 THEMIS2Q5TEJ8 643 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 SRGAP1Q7Z6B7 1085 aa15.78■□□□□ 0.12
SHMT2-226ENST00000556825 YTHDF3Q7Z739 585 aaKnown RBP15.78■□□□□ 0.12
SHMT2-226ENST00000556825 RICTORQ6R327 1708 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 FRMPD1Q5SYB0 1578 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 VWA3AA6NCI4 1184 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 LRRIQ3A6PVS8 624 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-226ENST00000556825 TUBBP07437 444 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 FAM69CQ0P6D2 419 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 CAPRIN2Q6IMN6 1127 aaKnown RBP15.77■□□□□ 0.12
SHMT2-226ENST00000556825 TMC6Q7Z403 805 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 IGSF22Q8N9C0 903 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 ESYT1Q9BSJ8 1104 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 VCPKMTQ9H867 229 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 RGL1Q9NZL6 768 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 PHF8Q9UPP1 1060 aa15.77■□□□□ 0.12
SHMT2-226ENST00000556825 EFCAB6Q5THR3 1501 aa15.77■□□□□ 0.11
SHMT2-226ENST00000556825 LMTK2Q8IWU2 1503 aa15.77■□□□□ 0.11
SHMT2-226ENST00000556825 CWF19L1Q69YN2 538 aaKnown RBP15.76■□□□□ 0.11
SHMT2-226ENST00000556825 GGT6Q6P531 493 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 B4GALNT2Q8NHY0 566 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 HOOK2Q96ED9 719 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 RMI1Q9H9A7 625 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 G3BP2Q9UN86 482 aaKnown RBP15.76■□□□□ 0.11
SHMT2-226ENST00000556825 KIF1BO60333 1816 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 IQGAP1P46940 1657 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 EIF3HO15372 352 aaKnown RBP eCLIP15.76■□□□□ 0.11
SHMT2-226ENST00000556825 SLC8A1P32418 973 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 BRAPQ7Z569 592 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 FAM135BQ49AJ0 1406 aa15.76■□□□□ 0.11
SHMT2-226ENST00000556825 RANBP1P43487 201 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 GNG11P61952 73 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 PPFIA1Q13136 1202 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 MIS18BP1Q6P0N0 1132 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 PARP9Q8IXQ6 854 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 KIFC2Q96AC6 838 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 WDR24Q96S15 920 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 TSGA10Q9BZW7 698 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 CENPHQ9H3R5 247 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 SLC40A1Q9NP59 571 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 GOLGA6L9A6NEM1 432 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 NR1I2O75469 434 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 IFIT2P09913 472 aaKnown RBP15.75■□□□□ 0.11
SHMT2-226ENST00000556825 TPP2P29144 1249 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-226ENST00000556825 CCDC181Q5TID7 509 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 SLC30A9Q6PML9 568 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 FAM228AQ86W67 206 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 FAM76AQ8TAV0 307 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 DHX58Q96C10 678 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 FAM163AQ96GL9 167 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-226ENST00000556825 OSBPL9Q96SU4 736 aa15.75■□□□□ 0.11
SHMT2-226ENST00000556825 SCAND2PQ9GZW5 306 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms