RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 OTUD7BQ6GQQ9 843 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 C15orf52Q6ZUT6 534 aaKnown RBP16.16■□□□□ 0.18
SHMT2-223ENST00000556689 OTOP1Q7RTM1 612 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 CERS5Q8N5B7 392 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 LINS1Q8NG48 757 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 WNK4Q96J92 1243 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 CLMNQ96JQ2 1002 aa16.16■□□□□ 0.18
SHMT2-223ENST00000556689 COL1A1P02452 1464 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-223ENST00000556689 F8W031 263 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 IL1R1P14778 569 aa16.15■□□□□ 0.18
SHMT2-223ENST00000556689 FKBP1AP62942 108 aaKnown RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 FLIIQ13045 1269 aa16.15■□□□□ 0.18
SHMT2-223ENST00000556689 IFIT5Q13325 482 aaKnown RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 FKBP5Q13451 457 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 HELBQ8NG08 1087 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 DNAAF4Q8WXU2 420 aa16.15■□□□□ 0.18
SHMT2-223ENST00000556689 PRMT6Q96LA8 375 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-223ENST00000556689 CLRN2A0PK11 232 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 SPDYE2BA6NHP3 402 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 IGF2BP3O00425 579 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHMT2-223ENST00000556689 SPDYE6P0CI01 402 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 IREB2P48200 963 aaKnown RBP16.14■□□□□ 0.17
SHMT2-223ENST00000556689 CCDC27Q2M243 656 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 NBPF12Q5TAG4 269 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-223ENST00000556689 ZNF804AQ7Z570 1209 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 WWC1Q8IX03 1113 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 ERO1AQ96HE7 468 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 VEZTQ9HBM0 779 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 PCDHAC2Q9Y5I4 1007 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 IRS2Q9Y4H2 1338 aa16.14■□□□□ 0.17
SHMT2-223ENST00000556689 USP2O75604 605 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-223ENST00000556689 RBM5P52756 815 aaKnown RBP eCLIP16.13■□□□□ 0.17
SHMT2-223ENST00000556689 POTEFA5A3E0 1075 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 FOXO4P98177 505 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 CRHR2Q13324 411 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 RASA3Q14644 834 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 ANKRD13AQ8IZ07 590 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 PTPN22Q9Y2R2 807 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 CHMP3Q9Y3E7 222 aa16.12■□□□□ 0.17
SHMT2-223ENST00000556689 MKI67P46013 3256 aaKnown RBP16.12■□□□□ 0.17
SHMT2-223ENST00000556689 TESPA1A2RU30 521 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-223ENST00000556689 CD99L2Q8TCZ2 262 aa16.11■□□□□ 0.17
SHMT2-223ENST00000556689 EFCC1Q9HA90 598 aa16.11■□□□□ 0.17
SHMT2-223ENST00000556689 PLIN1O60240 522 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 GJA5P36382 358 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 SP3Q02447 781 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 CCDC57Q2TAC2 916 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 PTPN18Q99952 460 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 JAG2Q9Y219 1238 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 IL16Q14005 1332 aa16.1■□□□□ 0.17
SHMT2-223ENST00000556689 ZNF646O15015 1829 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-223ENST00000556689 MYH3P11055 1940 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 TNFAIP1Q13829 316 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 TAF7LQ5H9L4 462 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 HABP4Q5JVS0 413 aaKnown RBP16.09■□□□□ 0.17
SHMT2-223ENST00000556689 LMBR1LQ6UX01 489 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 LDHAL6AQ6ZMR3 332 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 ARMC5Q96C12 935 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 SPEF2Q9C093 1822 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 AOX1Q06278 1338 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 SSC5DA1L4H1 1573 aa16.09■□□□□ 0.17
SHMT2-223ENST00000556689 HTTP42858 3142 aa16.08■□□□□ 0.17
SHMT2-223ENST00000556689 CENPFP49454 3210 aa16.08■□□□□ 0.17
SHMT2-223ENST00000556689 VAMP4O75379 141 aa16.08■□□□□ 0.16
SHMT2-223ENST00000556689 ARHGEF6Q15052 776 aa16.08■□□□□ 0.16
SHMT2-223ENST00000556689 OPTNQ96CV9 577 aa16.08■□□□□ 0.16
SHMT2-223ENST00000556689 ELP3Q9H9T3 547 aa16.08■□□□□ 0.16
SHMT2-223ENST00000556689 CNNM1Q9NRU3 951 aa16.08■□□□□ 0.16
SHMT2-223ENST00000556689 ZNF70Q9UC06 446 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-223ENST00000556689 EN2P19622 333 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-223ENST00000556689 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 NCBP3Q53F19 620 aaKnown RBP16.07■□□□□ 0.16
SHMT2-223ENST00000556689 BEND3Q5T5X7 828 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 ZNF594Q96JF6 807 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-223ENST00000556689 MS4A4AQ96JQ5 239 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 TMEM106CQ9BVX2 250 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 TDRD3Q9H7E2 651 aaKnown RBP16.07■□□□□ 0.16
SHMT2-223ENST00000556689 SERPINA10Q9UK55 444 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 TTF2Q9UNY4 1162 aaKnown RBP16.07■□□□□ 0.16
SHMT2-223ENST00000556689 FAM205AQ6ZU69 1335 aa16.07■□□□□ 0.16
SHMT2-223ENST00000556689 F6X3S4 739 aa16.06■□□□□ 0.16
SHMT2-223ENST00000556689 EPHA10Q5JZY3 1008 aa16.06■□□□□ 0.16
SHMT2-223ENST00000556689 MFSD14BQ5SR56 506 aa16.06■□□□□ 0.16
SHMT2-223ENST00000556689 TDRD7Q8NHU6 1098 aaKnown RBP16.06■□□□□ 0.16
SHMT2-223ENST00000556689 HIBADHP31937 336 aaKnown RBP16.05■□□□□ 0.16
SHMT2-223ENST00000556689 MAP3K9P80192 1104 aa16.05■□□□□ 0.16
SHMT2-223ENST00000556689 UBE4AQ14139 1066 aa16.05■□□□□ 0.16
SHMT2-223ENST00000556689 CCDC184Q52MB2 194 aa16.05■□□□□ 0.16
SHMT2-223ENST00000556689 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-223ENST00000556689 NBPF11Q86T75 865 aa16.05■□□□□ 0.16
SHMT2-223ENST00000556689 DZIP1LQ8IYY4 767 aaKnown RBP16.05■□□□□ 0.16
SHMT2-223ENST00000556689 ZFYVE28Q9HCC9 887 aa16.05■□□□□ 0.16
SHMT2-223ENST00000556689 FANCIQ9NVI1 1328 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 TCP10L2B9ZVM9 353 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 GRM8O00222 908 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 TNNI2P48788 182 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 GTF2A2P52657 109 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 CAP1Q01518 475 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 BRI3BPQ8WY22 251 aa16.04■□□□□ 0.16
SHMT2-223ENST00000556689 FAM84BQ96KN1 310 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms