RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CYP7A1P22680 504 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 ATP2B2Q01814 1243 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 STX1AQ16623 288 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 DLC1Q96QB1 1528 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 SKILP12757 684 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 TCIRG1Q13488 830 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 M0R2C6 588 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 PDIA6Q15084 440 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 PTPN14Q15678 1187 aa17.21■□□□□ 0.35
CUX1-215ENST00000556210 RIOK3O14730 519 aaKnown RBP17.2■□□□□ 0.34
CUX1-215ENST00000556210 CDKL5O76039 1030 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 PUS7LQ9H0K6 701 aaKnown RBP17.2■□□□□ 0.34
CUX1-215ENST00000556210 NRKQ7Z2Y5 1582 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 PYCARDQ9ULZ3 195 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 ZBTB1Q9Y2K1 713 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 SFPQP23246 707 aaKnown RBP eCLIP17.2■□□□□ 0.341e-6■■■■□ 21.6
CUX1-215ENST00000556210 AFMP43652 599 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 HLFQ16534 295 aa17.2■□□□□ 0.34
CUX1-215ENST00000556210 ZNF532Q9HCE3 1301 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 SYKP43405 635 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 PHKA1P46020 1223 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 MTX1Q13505 466 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 SMIM5Q71RC9 77 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 MNS1Q8NEH6 495 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 GNL3LQ9NVN8 582 aaKnown RBP17.19■□□□□ 0.34
CUX1-215ENST00000556210 NEURL4Q96JN8 1562 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 MAST3O60307 1309 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 SALL3Q9BXA9 1300 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 SSRP1Q08945 709 aaKnown RBP17.19■□□□□ 0.34
CUX1-215ENST00000556210 HELLSQ9NRZ9 838 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 BCL2L12Q9HB09 334 aa17.19■□□□□ 0.34
CUX1-215ENST00000556210 HOOK1Q9UJC3 728 aaKnown RBP17.19■□□□□ 0.34
CUX1-215ENST00000556210 XBP1P17861 261 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 U2AF2P26368 475 aaKnown RBP eCLIP17.18■□□□□ 0.341e-7■■■■■ 27.9
CUX1-215ENST00000556210 SCARF1Q14162 830 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 FAM182BQ5T319 152 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 KCNJ14Q9UNX9 436 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 NPHP4O75161 1426 aaPredicted RBP17.18■□□□□ 0.34
CUX1-215ENST00000556210 IFNKQ9P0W0 207 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 RIMBP3CA6NJZ7 1639 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 RIMBP3BA6NNM3 1639 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 RIMBP3Q9UFD9 1639 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 PDIA3P30101 505 aaKnown RBP17.18■□□□□ 0.34
CUX1-215ENST00000556210 APPBP2Q92624 585 aa17.18■□□□□ 0.34
CUX1-215ENST00000556210 NOL10Q9BSC4 688 aaKnown RBP17.18■□□□□ 0.34
CUX1-215ENST00000556210 ZFYP08048 801 aaPredicted RBP17.17■□□□□ 0.34
CUX1-215ENST00000556210 SEC31BQ9NQW1 1179 aa17.17■□□□□ 0.34
CUX1-215ENST00000556210 DDB1Q16531 1140 aa17.17■□□□□ 0.34
CUX1-215ENST00000556210 STOX1Q6ZVD7 989 aa17.17■□□□□ 0.34
CUX1-215ENST00000556210 TEX13AQ9BXU3 409 aaPredicted RBP17.17■□□□□ 0.34
CUX1-215ENST00000556210 CLSTN2Q9H4D0 955 aa17.17■□□□□ 0.34
CUX1-215ENST00000556210 WTAPQ15007 396 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 ZSWIM4Q9H7M6 989 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 BCAMP50895 628 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 STX17P56962 302 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 PIGBQ92521 554 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 ANKIB1Q9P2G1 1089 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 CLIC4Q9Y696 253 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 TECPR2O15040 1411 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 CAVIN4Q5BKX8 364 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.16■□□□□ 0.34
CUX1-215ENST00000556210 CGNQ9P2M7 1197 aaKnown RBP17.16■□□□□ 0.34
CUX1-215ENST00000556210 MRVI1Q9Y6F6 885 aa17.16■□□□□ 0.34
CUX1-215ENST00000556210 PDIA4P13667 645 aaKnown RBP17.15■□□□□ 0.34
CUX1-215ENST00000556210 NSUN7Q8NE18 718 aaKnown RBP17.15■□□□□ 0.34
CUX1-215ENST00000556210 STAMQ92783 540 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 NGLY1Q96IV0 654 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 VAT1LQ9HCJ6 419 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 RPAP1Q9BWH6 1393 aaPredicted RBP17.15■□□□□ 0.34
CUX1-215ENST00000556210 ARID5BQ14865 1188 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 BRMS1Q9HCU9 246 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 ERICH4A6NGS2 130 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 SDR42E1Q8WUS8 393 aa17.15■□□□□ 0.34
CUX1-215ENST00000556210 TTF1Q15361 905 aaPredicted RBP17.14■□□□□ 0.33
CUX1-215ENST00000556210 CLIC6Q96NY7 704 aa17.14■□□□□ 0.33
CUX1-215ENST00000556210 CEMIPQ8WUJ3 1361 aa17.14■□□□□ 0.33
CUX1-215ENST00000556210 PGBD1Q96JS3 809 aa17.14■□□□□ 0.33
CUX1-215ENST00000556210 CTAGE5O15320 804 aa17.14■□□□□ 0.33
CUX1-215ENST00000556210 ZNF335Q9H4Z2 1342 aaPredicted RBP17.14■□□□□ 0.33
CUX1-215ENST00000556210 PRKAB2O43741 272 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 URI1O94763 535 aaPredicted RBP17.13■□□□□ 0.33
CUX1-215ENST00000556210 FAM160A1Q05DH4 1040 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 CCDC102BQ68D86 513 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 TFCP2L1Q9NZI6 479 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 SPATA31D1Q6ZQQ2 1576 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 ZMYM1Q5SVZ6 1142 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 C11orf57Q6ZUT1 292 aaPredicted RBP17.13■□□□□ 0.33
CUX1-215ENST00000556210 BRINP3Q76B58 766 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 AMOTL1Q8IY63 956 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 WWC3Q9ULE0 1092 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 DIP2BQ9P265 1576 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 PDE4CQ08493 712 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 RTN1Q16799 776 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 PCDHA7Q9UN72 937 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 ANGEL1Q9UNK9 670 aaKnown RBP17.13■□□□□ 0.33
CUX1-215ENST00000556210 IFT172Q9UG01 1749 aa17.13■□□□□ 0.33
CUX1-215ENST00000556210 PLIN2Q99541 437 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 STX8Q9UNK0 236 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 GYG1P46976 350 aa17.12■□□□□ 0.33
CUX1-215ENST00000556210 ZNF75DP51815 510 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms