RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 KIAA0825Q8IV33 1275 aa25.64■■□□□ 1.7
CCDC88C-210ENST00000555995 RCAN3Q9UKA8 241 aa25.64■■□□□ 1.7
CCDC88C-210ENST00000555995 ABT1Q9ULW3 272 aaKnown RBP25.64■■□□□ 1.7
CCDC88C-210ENST00000555995 ECM29Q5VYK3 1845 aa25.64■■□□□ 1.7
CCDC88C-210ENST00000555995 TRAF5O00463 557 aa25.63■■□□□ 1.69
CCDC88C-210ENST00000555995 FRAT2O75474 233 aaPredicted RBP25.63■■□□□ 1.69
CCDC88C-210ENST00000555995 SCARF1Q14162 830 aa25.63■■□□□ 1.69
CCDC88C-210ENST00000555995 TBC1D22AQ8WUA7 517 aa25.63■■□□□ 1.69
CCDC88C-210ENST00000555995 MXD3Q9BW11 206 aa25.63■■□□□ 1.69
CCDC88C-210ENST00000555995 CELF2O95319 508 aaKnown RBP25.62■■□□□ 1.69
CCDC88C-210ENST00000555995 ATP2B3Q16720 1220 aa25.62■■□□□ 1.69
CCDC88C-210ENST00000555995 RASSF10A6NK89 507 aa25.61■■□□□ 1.69
CCDC88C-210ENST00000555995 ANGEL2Q5VTE6 544 aaKnown RBP25.61■■□□□ 1.69
CCDC88C-210ENST00000555995 USP48Q86UV5 1035 aa25.61■■□□□ 1.69
CCDC88C-210ENST00000555995 DEFB115Q30KQ5 88 aa25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 MFSD14BQ5SR56 506 aa25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 CHMP4BQ9H444 224 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 MKRN1Q9UHC7 482 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 PA2G4Q9UQ80 394 aaKnown RBP25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 AKAP2Q9Y2D5 859 aa25.6■■□□□ 1.69
CCDC88C-210ENST00000555995 WNT10BO00744 389 aa25.59■■□□□ 1.69
CCDC88C-210ENST00000555995 CERS5Q8N5B7 392 aa25.59■■□□□ 1.69
CCDC88C-210ENST00000555995 MTMR14Q8NCE2 650 aa25.59■■□□□ 1.69
CCDC88C-210ENST00000555995 GNL3LQ9NVN8 582 aaKnown RBP25.59■■□□□ 1.69
CCDC88C-210ENST00000555995 TLL2Q9Y6L7 1015 aa25.59■■□□□ 1.69
CCDC88C-210ENST00000555995 RLBP1P12271 317 aa25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 DLGAP5Q15398 846 aa25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 CST9Q5W186 159 aa25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 APOBEC3FQ8IUX4 373 aaKnown RBP25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 ZNF408Q9H9D4 720 aa25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 COL1A1P02452 1464 aaPredicted RBP25.58■■□□□ 1.69
CCDC88C-210ENST00000555995 ZBTB7BO15156 539 aaPredicted RBP25.57■■□□□ 1.68
CCDC88C-210ENST00000555995 MYO1BO43795 1136 aa25.57■■□□□ 1.68
CCDC88C-210ENST00000555995 ECE1P42892 770 aa25.57■■□□□ 1.68
CCDC88C-210ENST00000555995 HHIPL1Q96JK4 782 aa25.57■■□□□ 1.68
CCDC88C-210ENST00000555995 ADM5C9JUS6 153 aa25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 BCAMP50895 628 aa25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 FMR1Q06787 632 aaKnown RBP eCLIP25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 G3BP1Q13283 466 aaKnown RBP eCLIP25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 NBPF9Q3BBW0 867 aa25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 SUGT1Q9Y2Z0 365 aa25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 MAST3O60307 1309 aa25.56■■□□□ 1.68
CCDC88C-210ENST00000555995 SEMA3EO15041 775 aa25.55■■□□□ 1.68
CCDC88C-210ENST00000555995 ZBTB22O15209 634 aa25.55■■□□□ 1.68
CCDC88C-210ENST00000555995 ZBED3Q96IU2 234 aaPredicted RBP25.55■■□□□ 1.68
CCDC88C-210ENST00000555995 DDX19BQ9UMR2 479 aa25.55■■□□□ 1.68
CCDC88C-210ENST00000555995 JAG2Q9Y219 1238 aa25.55■■□□□ 1.68
CCDC88C-210ENST00000555995 PNMA6EA0A0J9YXQ4 647 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 F8W031 263 aaPredicted RBP25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 ATP8B2P98198 1209 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 CHAF1AQ13111 956 aaPredicted RBP25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 SAPCD2Q86UD0 394 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 C2orf69Q8N8R5 385 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 WDR66Q8TBY9 1149 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 PANK1Q8TE04 598 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 SERPINA10Q9UK55 444 aa25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 IQSEC3Q9UPP2 1182 aaPredicted RBP25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 ASTN2O75129 1339 aaPredicted RBP25.54■■□□□ 1.68
CCDC88C-210ENST00000555995 THSD7BQ9C0I4 1608 aa25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 POLA2Q14181 598 aa25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 MVPQ14764 893 aaKnown RBP25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 CFAP100Q494V2 611 aa25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 SSH3Q8TE77 659 aa25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 CDCA5Q96FF9 252 aa25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 GBA2Q9HCG7 927 aaPredicted RBP25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 TTF2Q9UNY4 1162 aaKnown RBP25.53■■□□□ 1.68
CCDC88C-210ENST00000555995 PAPPA2Q9BXP8 1791 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 SPDYE2BA6NHP3 402 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 SPDYE6P0CI01 402 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 NF2P35240 595 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 VEGFBP49765 207 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 FKBP1BP68106 108 aa25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 HDLBPQ00341 1268 aaKnown RBP25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 PAXIP1Q6ZW49 1069 aaPredicted RBP25.52■■□□□ 1.68
CCDC88C-210ENST00000555995 RBM5P52756 815 aaKnown RBP eCLIP25.51■■□□□ 1.67
CCDC88C-210ENST00000555995 DENND2AQ9ULE3 1009 aa25.51■■□□□ 1.67
CCDC88C-210ENST00000555995 PPP2R3BQ9Y5P8 575 aa25.51■■□□□ 1.67
CCDC88C-210ENST00000555995 TFCP2Q12800 502 aa25.5■■□□□ 1.67
CCDC88C-210ENST00000555995 OS9Q13438 667 aaPredicted RBP25.5■■□□□ 1.67
CCDC88C-210ENST00000555995 PDE3AQ14432 1141 aa25.5■■□□□ 1.67
CCDC88C-210ENST00000555995 WDR33Q9C0J8 1336 aaKnown RBP25.5■■□□□ 1.67
CCDC88C-210ENST00000555995 PDS5AQ29RF7 1337 aaKnown RBP25.49■■□□□ 1.67
CCDC88C-210ENST00000555995 A0A1B0GUL7 405 aa25.49■■□□□ 1.67
CCDC88C-210ENST00000555995 CAPNS2Q96L46 248 aa25.49■■□□□ 1.67
CCDC88C-210ENST00000555995 C1orf115Q9H7X2 142 aa25.49■■□□□ 1.67
CCDC88C-210ENST00000555995 HUNKP57058 714 aa25.48■■□□□ 1.67
CCDC88C-210ENST00000555995 TNFAIP1Q13829 316 aa25.48■■□□□ 1.67
CCDC88C-210ENST00000555995 ZGPATQ8N5A5 531 aaKnown RBP25.48■■□□□ 1.67
CCDC88C-210ENST00000555995 MRIQ9BWK5 157 aa25.48■■□□□ 1.67
CCDC88C-210ENST00000555995 SALL1Q9NSC2 1324 aa25.47■■□□□ 1.67
CCDC88C-210ENST00000555995 CCDC102BQ68D86 513 aa25.47■■□□□ 1.67
CCDC88C-210ENST00000555995 TEKT1Q969V4 418 aa25.47■■□□□ 1.67
CCDC88C-210ENST00000555995 GPR108Q9NPR9 543 aa25.47■■□□□ 1.67
CCDC88C-210ENST00000555995 SURF6O75683 361 aaKnown RBP25.46■■□□□ 1.67
CCDC88C-210ENST00000555995 CRKP46108 304 aa25.46■■□□□ 1.67
CCDC88C-210ENST00000555995 CEP85Q6P2H3 762 aa25.46■■□□□ 1.67
CCDC88C-210ENST00000555995 NOP58Q9Y2X3 529 aaKnown RBP25.46■■□□□ 1.67
CCDC88C-210ENST00000555995 PHKA1P46020 1223 aa25.45■■□□□ 1.66
CCDC88C-210ENST00000555995 MAP2K1Q02750 393 aaPredicted RBP25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms