RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 RASGRF1Q13972 1273 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 SPTY2D1Q68D10 685 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-220ENST00000555634 SKAP1Q86WV1 359 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 NIM1KQ8IY84 436 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 WDR66Q8TBY9 1149 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 C7orf43Q8WVR3 580 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 JDP2Q8WYK2 163 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 FBXW7Q969H0 707 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 UPF2Q9HAU5 1272 aaKnown RBP13.56□□□□□ -0.24
SHMT2-220ENST00000555634 SNED1Q8TER0 1413 aa13.56□□□□□ -0.24
SHMT2-220ENST00000555634 IGSF3O75054 1194 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 ZFYP08048 801 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 SDSP20132 328 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 IARSP41252 1262 aaKnown RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 MCAMP43121 646 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 MAP3K12Q12852 859 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 CHAF1AQ13111 956 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 AOC3Q16853 763 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 TMED8Q6PL24 325 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 OLFM4Q6UX06 510 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 PODNQ7Z5L7 613 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 FBXO33Q7Z6M2 555 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 FAM84BQ96KN1 310 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 MAST3O60307 1309 aa13.55□□□□□ -0.24
SHMT2-220ENST00000555634 ZNF646O15015 1829 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-220ENST00000555634 SNAP23O00161 211 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 ZBTB22O15209 634 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 ECE2O60344 883 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 MAP4K4O95819 1239 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-220ENST00000555634 IL1R1P14778 569 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 GSPT1P15170 499 aaKnown RBP13.54□□□□□ -0.24
SHMT2-220ENST00000555634 KLRK1P26718 216 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 MFAP1P55081 439 aaKnown RBP13.54□□□□□ -0.24
SHMT2-220ENST00000555634 DZIP1Q86YF9 867 aaKnown RBP13.54□□□□□ -0.24
SHMT2-220ENST00000555634 GPR101Q96P66 508 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-220ENST00000555634 CD209Q9NNX6 404 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 LRP2BPQ9P2M1 347 aa13.54□□□□□ -0.24
SHMT2-220ENST00000555634 ECM29Q5VYK3 1845 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 SCN9AQ15858 1988 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 IDH1O75874 414 aaKnown RBP13.53□□□□□ -0.24
SHMT2-220ENST00000555634 GPR162Q16538 588 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 SLF2Q8IX21 1173 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 KBTBD3Q8NAB2 608 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 NOL10Q9BSC4 688 aaKnown RBP13.53□□□□□ -0.24
SHMT2-220ENST00000555634 SNRKQ9NRH2 765 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 ZNF277Q9NRM2 450 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-220ENST00000555634 HMG20BQ9P0W2 317 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 ABCF2Q9UG63 623 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 IQSEC3Q9UPP2 1182 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-220ENST00000555634 MYO3BQ8WXR4 1341 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 RAD50Q92878 1312 aa13.53□□□□□ -0.24
SHMT2-220ENST00000555634 COL1A1P02452 1464 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-220ENST00000555634 GRIN3BO60391 1043 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 ZAP70P43403 619 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 GSTO1P78417 241 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 ARHGAP27Q6ZUM4 889 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 ERICH6Q7L0X2 663 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 TDRD7Q8NHU6 1098 aaKnown RBP13.52□□□□□ -0.25
SHMT2-220ENST00000555634 DBNDD1Q9H9R9 158 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 RAI14Q9P0K7 980 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 SALL1Q9NSC2 1324 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 IRS2Q9Y4H2 1338 aa13.52□□□□□ -0.25
SHMT2-220ENST00000555634 NAV1Q8NEY1 1877 aa13.51□□□□□ -0.25
SHMT2-220ENST00000555634 LDHBP07195 334 aaKnown RBP13.51□□□□□ -0.25
SHMT2-220ENST00000555634 SCARF1Q14162 830 aa13.51□□□□□ -0.25
SHMT2-220ENST00000555634 DOK7Q18PE1 504 aa13.51□□□□□ -0.25
SHMT2-220ENST00000555634 TXNRD3Q86VQ6 643 aa13.51□□□□□ -0.25
SHMT2-220ENST00000555634 SUGT1Q9Y2Z0 365 aa13.51□□□□□ -0.25
SHMT2-220ENST00000555634 LAMB1P07942 1786 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 REC8O95072 547 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 LMNB1P20700 586 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 EIF6P56537 245 aaKnown RBP13.5□□□□□ -0.25
SHMT2-220ENST00000555634 MFSD14BQ5SR56 506 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 PI16Q6UXB8 463 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 SLC51AQ86UW1 340 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 CERS3Q8IU89 383 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 ZNRF3Q9ULT6 936 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 LAMA4Q16363 1823 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 FOCADQ5VW36 1801 aa13.5□□□□□ -0.25
SHMT2-220ENST00000555634 FAM205AQ6ZU69 1335 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 USP17L3A6NCW0 530 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 USP17L4A6NCW7 530 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 NFKBIEO00221 500 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 CYP2E1P05181 493 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-220ENST00000555634 GTF2IP78347 998 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 TNIP1Q15025 636 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 SLC9C2Q5TAH2 1124 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 STRIP1Q5VSL9 837 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 TTLL5Q6EMB2 1281 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 KIAA1211Q6ZU35 1233 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 USP17L1Q7RTZ2 530 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 NDUFB9Q9Y6M9 179 aa13.49□□□□□ -0.25
SHMT2-220ENST00000555634 CDK5RAP2Q96SN8 1893 aa13.48□□□□□ -0.25
SHMT2-220ENST00000555634 WTIPA6NIX2 430 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-220ENST00000555634 RNF113AO15541 343 aaKnown RBP13.48□□□□□ -0.25
SHMT2-220ENST00000555634 LDHCP07864 332 aa13.48□□□□□ -0.25
SHMT2-220ENST00000555634 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
SHMT2-220ENST00000555634 RASSF7Q02833 373 aa13.48□□□□□ -0.25
SHMT2-220ENST00000555634 NAA16Q6N069 864 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-220ENST00000555634 TBC1D9Q6ZT07 1266 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms