RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZBTB7BO15156 539 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-219ENST00000555563 IFIT1P09914 478 aaKnown RBP17.06■□□□□ 0.32
SHMT2-219ENST00000555563 SLC5A1P13866 664 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 CAVIN4Q5BKX8 364 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 VPS37DQ86XT2 251 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 OGFOD1Q8N543 542 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 LPIN2Q92539 896 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 YTHDC1Q96MU7 727 aaKnown RBP17.06■□□□□ 0.32
SHMT2-219ENST00000555563 CEP126Q9P2H0 1117 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 SASH1O94885 1247 aa17.05■□□□□ 0.32
SHMT2-219ENST00000555563 BCAMP50895 628 aa17.05■□□□□ 0.32
SHMT2-219ENST00000555563 ATP2B3Q16720 1220 aa17.05■□□□□ 0.32
SHMT2-219ENST00000555563 CDC37L1Q7L3B6 337 aa17.05■□□□□ 0.32
SHMT2-219ENST00000555563 IQSEC3Q9UPP2 1182 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-219ENST00000555563 MYH13Q9UKX3 1938 aa17.05■□□□□ 0.32
SHMT2-219ENST00000555563 ADM5C9JUS6 153 aa17.04■□□□□ 0.32
SHMT2-219ENST00000555563 MS4A1P11836 297 aa17.04■□□□□ 0.32
SHMT2-219ENST00000555563 FKBP1AP62942 108 aaKnown RBP17.04■□□□□ 0.32
SHMT2-219ENST00000555563 SCARF1Q14162 830 aa17.04■□□□□ 0.32
SHMT2-219ENST00000555563 ANGEL2Q5VTE6 544 aaKnown RBP17.04■□□□□ 0.32
SHMT2-219ENST00000555563 KRT26Q7Z3Y9 468 aa17.04■□□□□ 0.32
SHMT2-219ENST00000555563 DCPSQ96C86 337 aaKnown RBP17.04■□□□□ 0.32
SHMT2-219ENST00000555563 COL1A1P02452 1464 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-219ENST00000555563 F8W031 263 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-219ENST00000555563 POLA2Q14181 598 aa17.03■□□□□ 0.32
SHMT2-219ENST00000555563 MVPQ14764 893 aaKnown RBP17.03■□□□□ 0.32
SHMT2-219ENST00000555563 MFSD14BQ5SR56 506 aa17.03■□□□□ 0.32
SHMT2-219ENST00000555563 DLK2Q6UY11 383 aa17.03■□□□□ 0.32
SHMT2-219ENST00000555563 USP48Q86UV5 1035 aa17.03■□□□□ 0.32
SHMT2-219ENST00000555563 HDAC9Q9UKV0 1011 aa17.03■□□□□ 0.32
SHMT2-219ENST00000555563 WNT10BO00744 389 aa17.02■□□□□ 0.32
SHMT2-219ENST00000555563 CHAF1AQ13111 956 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-219ENST00000555563 NBPF9Q3BBW0 867 aa17.02■□□□□ 0.32
SHMT2-219ENST00000555563 CST9Q5W186 159 aa17.02■□□□□ 0.32
SHMT2-219ENST00000555563 MKRN1Q9UHC7 482 aaKnown RBP17.02■□□□□ 0.32
SHMT2-219ENST00000555563 COG6Q9Y2V7 657 aa17.02■□□□□ 0.32
SHMT2-219ENST00000555563 POLR2AP24928 1970 aaKnown RBP17.02■□□□□ 0.31
SHMT2-219ENST00000555563 CNTNAP1P78357 1384 aa17.02■□□□□ 0.31
SHMT2-219ENST00000555563 FRAT2O75474 233 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-219ENST00000555563 CELF2O95319 508 aaKnown RBP17.01■□□□□ 0.31
SHMT2-219ENST00000555563 MMP14P50281 582 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 ATP8B2P98198 1209 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 TFCP2Q12800 502 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 SULF1Q8IWU6 871 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 SSH3Q8TE77 659 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 ZNF408Q9H9D4 720 aa17.01■□□□□ 0.31
SHMT2-219ENST00000555563 ABT1Q9ULW3 272 aaKnown RBP17.01■□□□□ 0.31
SHMT2-219ENST00000555563 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-219ENST00000555563 ECM29Q5VYK3 1845 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 PITPNM2Q9BZ72 1349 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 ADORA1P30542 326 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 C20orf194Q5TEA3 1177 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 CEP85Q6P2H3 762 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 ZBED3Q96IU2 234 aaPredicted RBP17■□□□□ 0.31
SHMT2-219ENST00000555563 DDX19BQ9UMR2 479 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 PCDHAC2Q9Y5I4 1007 aa17■□□□□ 0.31
SHMT2-219ENST00000555563 PHKA1P46020 1223 aa16.99■□□□□ 0.31
SHMT2-219ENST00000555563 G3BP1Q13283 466 aaKnown RBP eCLIP16.99■□□□□ 0.318e-8■■■□□ 16.6
SHMT2-219ENST00000555563 GRIK5Q16478 980 aa16.99■□□□□ 0.31
SHMT2-219ENST00000555563 TBC1D22AQ8WUA7 517 aa16.99■□□□□ 0.31
SHMT2-219ENST00000555563 SCAF8Q9UPN6 1271 aaKnown RBP16.99■□□□□ 0.31
SHMT2-219ENST00000555563 A0A1B0GUL7 405 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 RASSF10A6NK89 507 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 DLGAP5Q15398 846 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 CFAP100Q494V2 611 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-219ENST00000555563 MTMR14Q8NCE2 650 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 TTF2Q9UNY4 1162 aaKnown RBP16.98■□□□□ 0.31
SHMT2-219ENST00000555563 AKAP2Q9Y2D5 859 aa16.98■□□□□ 0.31
SHMT2-219ENST00000555563 TIMM10P62072 90 aa16.97■□□□□ 0.31
SHMT2-219ENST00000555563 PDE3AQ14432 1141 aa16.97■□□□□ 0.31
SHMT2-219ENST00000555563 CCDC102BQ68D86 513 aa16.97■□□□□ 0.31
SHMT2-219ENST00000555563 CDCA5Q96FF9 252 aa16.97■□□□□ 0.31
SHMT2-219ENST00000555563 TLL2Q9Y6L7 1015 aa16.97■□□□□ 0.31
SHMT2-219ENST00000555563 AOX1Q06278 1338 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 THSD7BQ9C0I4 1608 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 SPDYE2BA6NHP3 402 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 SURF6O75683 361 aaKnown RBP16.96■□□□□ 0.31
SHMT2-219ENST00000555563 SPDYE6P0CI01 402 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 OS9Q13438 667 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-219ENST00000555563 XAGE2Q96GT9 111 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 ZBTB40Q9NUA8 1239 aa16.96■□□□□ 0.31
SHMT2-219ENST00000555563 GNL3LQ9NVN8 582 aaKnown RBP16.96■□□□□ 0.31
SHMT2-219ENST00000555563 VEGFBP49765 207 aa16.95■□□□□ 0.3
SHMT2-219ENST00000555563 RBM5P52756 815 aaKnown RBP eCLIP16.95■□□□□ 0.3
SHMT2-219ENST00000555563 DEFB115Q30KQ5 88 aa16.95■□□□□ 0.3
SHMT2-219ENST00000555563 SAPCD2Q86UD0 394 aa16.95■□□□□ 0.3
SHMT2-219ENST00000555563 APOBEC3FQ8IUX4 373 aaKnown RBP16.95■□□□□ 0.3
SHMT2-219ENST00000555563 SERPINA10Q9UK55 444 aa16.95■□□□□ 0.3
SHMT2-219ENST00000555563 NOP58Q9Y2X3 529 aaKnown RBP16.95■□□□□ 0.3
SHMT2-219ENST00000555563 PAPPA2Q9BXP8 1791 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 CLRN2A0PK11 232 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 SEMA3EO15041 775 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 CRKP46108 304 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 RASGRF1Q13972 1273 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 WDR66Q8TBY9 1149 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 PRMT6Q96LA8 375 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-219ENST00000555563 NEUROD6Q96NK8 337 aa16.94■□□□□ 0.3
SHMT2-219ENST00000555563 GBA2Q9HCG7 927 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-219ENST00000555563 DENND2AQ9ULE3 1009 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms