RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 GREM2Q9H772 168 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 LEMD3Q9Y2U8 911 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 ZNF804BA4D1E1 1349 aa12.49□□□□□ -0.41
SCFD1-215ENST00000555259 USP2O75604 605 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-215ENST00000555259 NBPF12Q5TAG4 269 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-215ENST00000555259 TTLL11Q8NHH1 800 aa12.48□□□□□ -0.41
SCFD1-215ENST00000555259 MS4A4AQ96JQ5 239 aa12.48□□□□□ -0.41
SCFD1-215ENST00000555259 TRIM35Q9UPQ4 493 aa12.48□□□□□ -0.41
SCFD1-215ENST00000555259 PCDHAC2Q9Y5I4 1007 aa12.48□□□□□ -0.41
SCFD1-215ENST00000555259 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
SCFD1-215ENST00000555259 CLRN2A0PK11 232 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 SH3TC2Q8TF17 1288 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 OPTNQ96CV9 577 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 MYO1BO43795 1136 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 TAF1CQ15572 869 aaPredicted RBP12.47□□□□□ -0.41
SCFD1-215ENST00000555259 CERS5Q8N5B7 392 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 BRI3BPQ8WY22 251 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 METTL22Q9BUU2 404 aaPredicted RBP12.47□□□□□ -0.41
SCFD1-215ENST00000555259 ELP3Q9H9T3 547 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 ZFYVE28Q9HCC9 887 aa12.47□□□□□ -0.41
SCFD1-215ENST00000555259 ECM29Q5VYK3 1845 aa12.46□□□□□ -0.41
SCFD1-215ENST00000555259 SPDYE2BA6NHP3 402 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 SPDYE6P0CI01 402 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 CFAP100Q494V2 611 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 CCDC146Q8IYE0 955 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 DPF3Q92784 378 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 PRMT6Q96LA8 375 aaPredicted RBP12.46□□□□□ -0.42
SCFD1-215ENST00000555259 VEZTQ9HBM0 779 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 CD209Q9NNX6 404 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 AOX1Q06278 1338 aa12.46□□□□□ -0.42
SCFD1-215ENST00000555259 RASA3Q14644 834 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 SHISA4Q96DD7 197 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 PRO3102Q9H379 93 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 MBIPQ9NS73 344 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 UNC80Q8N2C7 3258 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 OTOFQ9HC10 1997 aa12.45□□□□□ -0.42
SCFD1-215ENST00000555259 CCL15-CCL14A0A0B4J2E2 113 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 F8W031 263 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-215ENST00000555259 IGHMBP2P38935 993 aaKnown RBP12.44□□□□□ -0.42
SCFD1-215ENST00000555259 CCL15Q16663 113 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 FAM43AQ8N2R8 423 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 CNKSR2Q8WXI2 1034 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 ARHGAP39Q9C0H5 1083 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 ANKRD2Q9GZV1 360 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 MYH3P11055 1940 aa12.44□□□□□ -0.42
SCFD1-215ENST00000555259 DDX58O95786 925 aaKnown RBP12.43□□□□□ -0.42
SCFD1-215ENST00000555259 IGKV5-2P06315 115 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 GTF2A2P52657 109 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 LACTBP83111 547 aaPredicted RBP12.43□□□□□ -0.42
SCFD1-215ENST00000555259 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.43□□□□□ -0.42
SCFD1-215ENST00000555259 MAP3K2Q9Y2U5 619 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 ELL2O00472 640 aaPredicted RBP12.43□□□□□ -0.42
SCFD1-215ENST00000555259 KCNJ4P48050 445 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 MTFR1Q15390 333 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 ZSWIM8A7E2V4 1837 aa12.43□□□□□ -0.42
SCFD1-215ENST00000555259 TLR2O60603 784 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 GNRH1P01148 92 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 ITGA6P23229 1130 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 VGLL4Q14135 290 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 KIF22Q14807 665 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 UBE2Q1Q7Z7E8 422 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 MPHOSPH8Q99549 860 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 IRS2Q9Y4H2 1338 aa12.42□□□□□ -0.42
SCFD1-215ENST00000555259 SNAP23O00161 211 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 WDHD1O75717 1129 aaPredicted RBP12.41□□□□□ -0.42
SCFD1-215ENST00000555259 RBM5P52756 815 aaKnown RBP eCLIP12.41□□□□□ -0.42
SCFD1-215ENST00000555259 PRMT2P55345 433 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 FKBP1AP62942 108 aaKnown RBP12.41□□□□□ -0.42
SCFD1-215ENST00000555259 CHRNDQ07001 517 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 TNFAIP1Q13829 316 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 CDAN1Q8IWY9 1227 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 RUNDC1Q96C34 613 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 HTATIP2Q9BUP3 242 aa12.41□□□□□ -0.42
SCFD1-215ENST00000555259 PI4KAP2A4QPH2 592 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 ZNF853P0CG23 659 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 IL1R1P14778 569 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 SPDYE2Q495Y8 402 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 C15orf52Q6ZUT6 534 aaKnown RBP12.4□□□□□ -0.42
SCFD1-215ENST00000555259 UBE3BQ7Z3V4 1068 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 PI4KAP1Q8N8J0 262 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.4□□□□□ -0.42
SCFD1-215ENST00000555259 NKX2-3Q8TAU0 364 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 TEPSINQ96N21 525 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 VCANP13611 3396 aa12.4□□□□□ -0.42
SCFD1-215ENST00000555259 SOX1O00570 391 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 GJA8P48165 433 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 MNX1P50219 401 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 MAP3K9P80192 1104 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 CWF19L2Q2TBE0 894 aaKnown RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 KSR2Q6VAB6 950 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 ZCCHC17Q9NP64 241 aaKnown RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 ZNF70Q9UC06 446 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 JAG2Q9Y219 1238 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 NR2E3Q9Y5X4 410 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 CSADQ9Y600 493 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 A0A1W2PPC1 479 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 SPDYE5A6NIY4 337 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 NEURL1BA8MQ27 555 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 BTBD19C9JJ37 291 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 H7C1W4 665 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms