RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ARMC9Q7Z3E5 817 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 DZIP1LQ8IYY4 767 aaKnown RBP13.87□□□□□ -0.19
SHMT2-216ENST00000554975 JARID2Q92833 1246 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-216ENST00000554975 CLMNQ96JQ2 1002 aa13.87□□□□□ -0.19
SHMT2-216ENST00000554975 ANGEL1Q9UNK9 670 aaKnown RBP13.87□□□□□ -0.19
SHMT2-216ENST00000554975 COL6A3P12111 3177 aa13.86□□□□□ -0.19
SHMT2-216ENST00000554975 RWDD1Q9H446 243 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-216ENST00000554975 MBIPQ9NS73 344 aa13.86□□□□□ -0.19
SHMT2-216ENST00000554975 IFT57Q9NWB7 429 aa13.86□□□□□ -0.19
SHMT2-216ENST00000554975 COG6Q9Y2V7 657 aa13.86□□□□□ -0.19
SHMT2-216ENST00000554975 XDHP47989 1333 aa13.86□□□□□ -0.19
SHMT2-216ENST00000554975 MANSC4A6NHS7 340 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-216ENST00000554975 H0YGN5 161 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 ALDH1A1P00352 501 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 CRHR2Q13324 411 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 HDGFL1Q5TGJ6 251 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 PODNQ7Z5L7 613 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 OTUD5Q96G74 571 aa13.85□□□□□ -0.19
SHMT2-216ENST00000554975 GJA5P36382 358 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 EXOSC9Q06265 439 aaKnown RBP13.84□□□□□ -0.19
SHMT2-216ENST00000554975 TRIM28Q13263 835 aaKnown RBP13.84□□□□□ -0.19
SHMT2-216ENST00000554975 TXNRD3Q86VQ6 643 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 ZBTB38Q8NAP3 1195 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-216ENST00000554975 PANK1Q8TE04 598 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 FBXW7Q969H0 707 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 ERO1AQ96HE7 468 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 ZBED3Q96IU2 234 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-216ENST00000554975 WNK4Q96J92 1243 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 ZNF333Q96JL9 665 aa13.84□□□□□ -0.19
SHMT2-216ENST00000554975 MED23Q9ULK4 1368 aa13.83□□□□□ -0.19
SHMT2-216ENST00000554975 CACNA1FO60840 1977 aa13.83□□□□□ -0.19
SHMT2-216ENST00000554975 ELL2O00472 640 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-216ENST00000554975 ATP2B4P23634 1241 aa13.83□□□□□ -0.2
SHMT2-216ENST00000554975 ATF7IPQ6VMQ6 1270 aa13.83□□□□□ -0.2
SHMT2-216ENST00000554975 SLC10A4Q96EP9 437 aa13.83□□□□□ -0.2
SHMT2-216ENST00000554975 EFCC1Q9HA90 598 aa13.83□□□□□ -0.2
SHMT2-216ENST00000554975 A0A0C4DFX4 3053 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 A0A1B0GUL6 1792 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 ZNF853P0CG23 659 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 CCDC152Q4G0S7 254 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 APOBEC3FQ8IUX4 373 aaKnown RBP13.82□□□□□ -0.2
SHMT2-216ENST00000554975 OGFOD1Q8N543 542 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 PTPN18Q99952 460 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 PCDHAC2Q9Y5I4 1007 aa13.82□□□□□ -0.2
SHMT2-216ENST00000554975 DLL1O00548 723 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 HOXB7P09629 217 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 ZBTB48P10074 688 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-216ENST00000554975 KLRK1P26718 216 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 INHBEP58166 350 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 MAP3K11Q16584 847 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 STRIP1Q5VSL9 837 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 CHRDL2Q6WN34 429 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 KIAA0825Q8IV33 1275 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 ANKRD18AQ8IVF6 992 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 TSR2Q969E8 191 aaKnown RBP13.81□□□□□ -0.2
SHMT2-216ENST00000554975 PTCH2Q9Y6C5 1203 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 AOX1Q06278 1338 aa13.81□□□□□ -0.2
SHMT2-216ENST00000554975 COL1A1P02452 1464 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-216ENST00000554975 LAMA3Q16787 3333 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 PDE8AO60658 829 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 MYCP01106 439 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-216ENST00000554975 SP3Q02447 781 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 ARHGAP45Q92619 1136 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 MYD88Q99836 296 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 TMEM106CQ9BVX2 250 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 DEFB129Q9H1M3 183 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 PHAXQ9H814 394 aaKnown RBP13.8□□□□□ -0.2
SHMT2-216ENST00000554975 DBF4Q9UBU7 674 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-216ENST00000554975 MINPP1Q9UNW1 487 aa13.8□□□□□ -0.2
SHMT2-216ENST00000554975 PCCAP05165 728 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-216ENST00000554975 HDAC1Q13547 482 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-216ENST00000554975 SSH1Q8WYL5 1049 aa13.79□□□□□ -0.2
SHMT2-216ENST00000554975 UPF2Q9HAU5 1272 aaKnown RBP13.79□□□□□ -0.2
SHMT2-216ENST00000554975 RBM27Q9P2N5 1060 aaKnown RBP13.79□□□□□ -0.2
SHMT2-216ENST00000554975 DAXXQ9UER7 740 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-216ENST00000554975 MYO3BQ8WXR4 1341 aa13.79□□□□□ -0.2
SHMT2-216ENST00000554975 TRIM27P14373 513 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 RGS3P49796 1198 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 CCT4P50991 539 aaKnown RBP13.78□□□□□ -0.2
SHMT2-216ENST00000554975 C8orf34Q49A92 452 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 RIC3Q7Z5B4 369 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 C8orf58Q8NAV2 365 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 HYPKQ9NX55 129 aa13.78□□□□□ -0.2
SHMT2-216ENST00000554975 RLBP1P12271 317 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 SLC4A8Q2Y0W8 1093 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 SLC9C1Q4G0N8 1177 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 NBPF12Q5TAG4 269 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-216ENST00000554975 TTLL5Q6EMB2 1281 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 ITPRIPQ8IWB1 547 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 COA1Q9GZY4 146 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 GREM2Q9H772 168 aa13.77□□□□□ -0.21
SHMT2-216ENST00000554975 CLRN2A0PK11 232 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 TESPA1A2RU30 521 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-216ENST00000554975 USP2O75604 605 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-216ENST00000554975 CTSWP56202 376 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 GTF2IP78347 998 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 CERS5Q8N5B7 392 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 CCDC191Q8NCU4 936 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 SLC17A8Q8NDX2 589 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 SH3TC2Q8TF17 1288 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms