RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 E7EWF7 191 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 NPHP1O15259 732 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 SLC5A1P13866 664 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 FERMT3Q86UX7 667 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 CELF1Q92879 486 aaKnown RBP13.84□□□□□ -0.19
SHMT2-212ENST00000554467 JAK2O60674 1132 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 APPP05067 770 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 NBPF5PQ86XG9 351 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-212ENST00000554467 MAP7D2Q96T17 732 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 DENND2AQ9ULE3 1009 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 RTCBQ9Y3I0 505 aaKnown RBP13.84□□□□□ -0.19
SHMT2-212ENST00000554467 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-212ENST00000554467 AKAP11Q9UKA4 1901 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 ZNF532Q9HCE3 1301 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 DDX60Q8IY21 1712 aaKnown RBP13.84□□□□□ -0.19
SHMT2-212ENST00000554467 FGAP02671 866 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 RAB11FIP4Q86YS3 637 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 DDX11Q96FC9 970 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 SETDB2Q96T68 719 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 DSCC1Q9BVC3 393 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 LRRC4BQ9NT99 713 aa13.84□□□□□ -0.19
SHMT2-212ENST00000554467 TCHHQ07283 1943 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 CNTNAP4Q9C0A0 1308 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 WDR33Q9C0J8 1336 aaKnown RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 ZSCAN20P17040 1043 aaPredicted RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 MSNP26038 577 aaKnown RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 GYG1P46976 350 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 APOBRQ0VD83 1088 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 KRT32Q14532 448 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 SKOR2Q2VWA4 1001 aaPredicted RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 TSGA10IPQ3SY00 556 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 FAM196AQ6ZSG2 479 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 SPATA5Q8NB90 893 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 APPBP2Q92624 585 aa13.83□□□□□ -0.19
SHMT2-212ENST00000554467 ZSCAN31Q96LW9 406 aaPredicted RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 QTRT2Q9H974 415 aaKnown RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 SH2B1Q9NRF2 756 aaPredicted RBP13.83□□□□□ -0.19
SHMT2-212ENST00000554467 GADD45BO75293 160 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-212ENST00000554467 RPS6KA4O75676 772 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 CLEC4GQ6UXB4 293 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 CNPY2Q9Y2B0 182 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 FAM173BQ6P4H8 233 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 STK11IPQ8N1F8 1099 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 AK7Q96M32 723 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 NARFQ9UHQ1 456 aa13.83□□□□□ -0.2
SHMT2-212ENST00000554467 ZSCAN22P10073 491 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-212ENST00000554467 PDE6AP16499 860 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 ADD2P35612 726 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 CCT2P78371 535 aaKnown RBP13.82□□□□□ -0.2
SHMT2-212ENST00000554467 MAGEB6Q8N7X4 407 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 NCOA5Q9HCD5 579 aaKnown RBP13.82□□□□□ -0.2
SHMT2-212ENST00000554467 RREB1Q92766 1687 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 KLHL40Q2TBA0 621 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 ANKRD18AQ8IVF6 992 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 NKX2-3Q8TAU0 364 aa13.82□□□□□ -0.2
SHMT2-212ENST00000554467 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.82□□□□□ -0.26e-7■■□□□ 14.2
SHMT2-212ENST00000554467 ZNF500O60304 480 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 KLRK1P26718 216 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 ARID4AP29374 1257 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 DMTNQ08495 405 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 INCENPQ9NQS7 918 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 TAOK2Q9UL54 1235 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 ZFYP08048 801 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 LARP1BQ659C4 914 aaKnown RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 NOL7Q9UMY1 257 aaKnown RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 JAG2Q9Y219 1238 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 FIBPO43427 364 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 RFC4P35249 363 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 ANKRD1Q15327 319 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 CDC37L1Q7L3B6 337 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 CDC5LQ99459 802 aaKnown RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 TRPC5Q9UL62 973 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-212ENST00000554467 MTMR6Q9Y217 621 aa13.81□□□□□ -0.2
SHMT2-212ENST00000554467 TRIM37O94972 964 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 LRRFIP1Q32MZ4 808 aaKnown RBP13.8□□□□□ -0.2
SHMT2-212ENST00000554467 DHX32Q7L7V1 743 aaKnown RBP13.8□□□□□ -0.2
SHMT2-212ENST00000554467 USP48Q86UV5 1035 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 MIGA1Q8NAN2 632 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 ABCF2Q9UG63 623 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 UQCRFS1P1P0C7P4 283 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 F13A1P00488 732 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 RNF214Q8ND24 703 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 ARMT1Q9H993 441 aa13.8□□□□□ -0.2
SHMT2-212ENST00000554467 THSD7AQ9UPZ6 1657 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 DNM1Q05193 864 aaKnown RBP13.79□□□□□ -0.2
SHMT2-212ENST00000554467 SCRN1Q12765 414 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 MINPP1Q9UNW1 487 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 PRKAB2O43741 272 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 MBD4O95243 580 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 TTF1Q15361 905 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-212ENST00000554467 IMMTQ16891 758 aaKnown RBP13.79□□□□□ -0.2
SHMT2-212ENST00000554467 AIDAQ96BJ3 306 aa13.79□□□□□ -0.2
SHMT2-212ENST00000554467 TRAPPC3LQ5T215 181 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 RC3H1Q5TC82 1133 aaKnown RBP13.78□□□□□ -0.2
SHMT2-212ENST00000554467 GTF3C6Q969F1 213 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 TFCP2L1Q9NZI6 479 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 TMEM63CQ9P1W3 806 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 LAMA4Q16363 1823 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 LRP5O75197 1615 aa13.78□□□□□ -0.2
SHMT2-212ENST00000554467 PTMSP20962 102 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms