RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CPSF2Q9P2I0 782 aaKnown RBP10.96□□□□□ -0.66
SIX4-202ENST00000554079 DDX20Q9UHI6 824 aaKnown RBP10.96□□□□□ -0.66
SIX4-202ENST00000554079 CPA1P15085 419 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 GCKP35557 465 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 RAB27AP51159 221 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 LARP1BQ659C4 914 aaKnown RBP10.95□□□□□ -0.66
SIX4-202ENST00000554079 ANKRD23Q86SG2 305 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 UNC5CLQ8IV45 518 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 FAM177A1Q8N128 213 aaPredicted RBP10.95□□□□□ -0.66
SIX4-202ENST00000554079 IGSF22Q8N9C0 903 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 GBP3Q9H0R5 595 aa10.95□□□□□ -0.66
SIX4-202ENST00000554079 ABCC6O95255 1503 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 GOLGA6L9A6NEM1 432 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 RASSF9O75901 435 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 FAM163BP0C2L3 166 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 RBBP5Q15291 538 aaKnown RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 MAB21L3Q8N8X9 362 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 KLHL23Q8NBE8 558 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 BPIFA3Q9BQP9 254 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 LSG1Q9H089 658 aaKnown RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 ATP6V0A4Q9HBG4 840 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 KLC4Q9NSK0 619 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 NPHP4O75161 1426 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 SKAP2O75563 359 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 WDHD1O75717 1129 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 PECAM1P16284 738 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 SLC8A3P57103 927 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 ACTN3Q08043 901 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 ME3Q16798 604 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 RCSD1Q6JBY9 416 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 DRAXINQ8NBI3 349 aaPredicted RBP10.94□□□□□ -0.66
SIX4-202ENST00000554079 RILPL2Q969X0 211 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 EHD4Q9H223 541 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 ZSWIM4Q9H7M6 989 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 PPP6R1Q9UPN7 881 aa10.94□□□□□ -0.66
SIX4-202ENST00000554079 FRMD3A2A2Y4 597 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 EIF3HO15372 352 aaKnown RBP eCLIP10.93□□□□□ -0.66
SIX4-202ENST00000554079 HNRNPMP52272 730 aaKnown RBP eCLIP10.93□□□□□ -0.66
SIX4-202ENST00000554079 SMTNP53814 917 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 PDCD2Q16342 344 aaPredicted RBP10.93□□□□□ -0.66
SIX4-202ENST00000554079 MAGEC3Q8TD91 643 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 SMARCC1Q92922 1105 aaPredicted RBP10.93□□□□□ -0.66
SIX4-202ENST00000554079 SLC12A5Q9H2X9 1139 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 GOLPH3LQ9H4A5 285 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 STAP2Q9UGK3 403 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 SETBP1Q9Y6X0 1596 aa10.93□□□□□ -0.66
SIX4-202ENST00000554079 SHTN1A0MZ66 631 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 ARHGAP6O43182 974 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PSMD2Q13200 908 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 CEP85LQ5SZL2 805 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 FAM228AQ86W67 206 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 NECAB1Q8N987 351 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 BCAS4Q8TDM0 211 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 ZNF526Q8TF50 670 aaPredicted RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.92□□□□□ -0.66
SIX4-202ENST00000554079 NAT10Q9H0A0 1025 aaKnown RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 VCPKMTQ9H867 229 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 HPCAL4Q9UM19 191 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 MEFVO15553 781 aaPredicted RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 PDCP20941 246 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PRPHP41219 470 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 TUBB4BP68371 445 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PPFIA1Q13136 1202 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PLCB4Q15147 1175 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 KIF4BQ2VIQ3 1234 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 TWISTNBQ3B726 338 aaPredicted RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 TTLL7Q6ZT98 887 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 N4BP2Q86UW6 1770 aaPredicted RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.92□□□□□ -0.66
SIX4-202ENST00000554079 ZBTB10Q96DT7 871 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PAGR1Q9BTK6 254 aa10.92□□□□□ -0.66
SIX4-202ENST00000554079 PUF60Q9UHX1 559 aaKnown RBP10.92□□□□□ -0.66
SIX4-202ENST00000554079 AOX1Q06278 1338 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 NEFHP12036 1026 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 RESTQ13127 1097 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 SNX1Q13596 522 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 NCAPHQ15003 741 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 TRIM74Q86UV6 250 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 TRIM73Q86UV7 250 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 KIRREL3Q8IZU9 778 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 ENGASEQ8NFI3 743 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 OR8K1Q8NGG5 319 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 CCDC12Q8WUD4 166 aaPredicted RBP10.91□□□□□ -0.66
SIX4-202ENST00000554079 MEIS3Q99687 375 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 CDC23Q9UJX2 597 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 HMMRO75330 724 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 TUBBP07437 444 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 NAA25Q14CX7 972 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 WDR93Q6P2C0 686 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 YTHDF3Q7Z739 585 aaKnown RBP10.91□□□□□ -0.66
SIX4-202ENST00000554079 SPATS2Q86XZ4 545 aaKnown RBP10.91□□□□□ -0.66
SIX4-202ENST00000554079 FAM76AQ8TAV0 307 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 MBIPQ9NS73 344 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 HOMER3Q9NSC5 361 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 SAMM50Q9Y512 469 aa10.91□□□□□ -0.66
SIX4-202ENST00000554079 KIF1BO60333 1816 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 ITSN1Q15811 1721 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 DEPDC5O75140 1603 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 LMTK2Q8IWU2 1503 aa10.9□□□□□ -0.66
SIX4-202ENST00000554079 NEO1Q92859 1461 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms