RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 MYO5AQ9Y4I1 1855 aaKnown RBP17.6■□□□□ 0.41
SHMT2-210ENST00000553950 SBF1O95248 1867 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 COL1A1P02452 1464 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-210ENST00000553950 CDC45O75419 566 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 SDSP20132 328 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 ZSCAN25Q6NSZ9 544 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 PODNQ7Z5L7 613 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 TDRD7Q8NHU6 1098 aaKnown RBP17.59■□□□□ 0.41
SHMT2-210ENST00000553950 WDR66Q8TBY9 1149 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 TBC1D22AQ8WUA7 517 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 RILPL2Q969X0 211 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 CD209Q9NNX6 404 aa17.59■□□□□ 0.41
SHMT2-210ENST00000553950 SALL1Q9NSC2 1324 aa17.58■□□□□ 0.4
SHMT2-210ENST00000553950 IARSP41252 1262 aaKnown RBP17.58■□□□□ 0.4
SHMT2-210ENST00000553950 SLC51AQ86UW1 340 aa17.58■□□□□ 0.4
SHMT2-210ENST00000553950 KBTBD3Q8NAB2 608 aa17.58■□□□□ 0.4
SHMT2-210ENST00000553950 FSD1Q9BTV5 496 aa17.58■□□□□ 0.4
SHMT2-210ENST00000553950 HMG20BQ9P0W2 317 aa17.58■□□□□ 0.4
SHMT2-210ENST00000553950 SCN9AQ15858 1988 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 GOLIM4O00461 696 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 ZFYP08048 801 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-210ENST00000553950 AOC3Q16853 763 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 SPTY2D1Q68D10 685 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-210ENST00000553950 TXNRD3Q86VQ6 643 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 NIM1KQ8IY84 436 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 LARGE2Q8N3Y3 721 aa17.57■□□□□ 0.4
SHMT2-210ENST00000553950 GPR101Q96P66 508 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-210ENST00000553950 FAM205AQ6ZU69 1335 aa17.56■□□□□ 0.4
SHMT2-210ENST00000553950 RIMBP2O15034 1052 aa17.56■□□□□ 0.4
SHMT2-210ENST00000553950 ECE2O60344 883 aa17.56■□□□□ 0.4
SHMT2-210ENST00000553950 ZAP70P43403 619 aa17.56■□□□□ 0.4
SHMT2-210ENST00000553950 SCARF1Q14162 830 aa17.56■□□□□ 0.4
SHMT2-210ENST00000553950 MAST3O60307 1309 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 RAD50Q92878 1312 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 WTIPA6NIX2 430 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-210ENST00000553950 NFKBIEO00221 500 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 FKBP1AP62942 108 aaKnown RBP17.55■□□□□ 0.4
SHMT2-210ENST00000553950 MAP3K12Q12852 859 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 RUFY2Q8WXA3 655 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 JDP2Q8WYK2 163 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 DIAPH3Q9NSV4 1193 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 WWC3Q9ULE0 1092 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 SUGT1Q9Y2Z0 365 aa17.55■□□□□ 0.4
SHMT2-210ENST00000553950 MYO3BQ8WXR4 1341 aa17.54■□□□□ 0.4
SHMT2-210ENST00000553950 SNRKQ9NRH2 765 aa17.54■□□□□ 0.4
SHMT2-210ENST00000553950 ZNF277Q9NRM2 450 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-210ENST00000553950 MYH2Q9UKX2 1941 aa17.53■□□□□ 0.4
SHMT2-210ENST00000553950 GRIN3BO60391 1043 aa17.53■□□□□ 0.4
SHMT2-210ENST00000553950 MAP4K4O95819 1239 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-210ENST00000553950 CYP2E1P05181 493 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-210ENST00000553950 CHAF1AQ13111 956 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-210ENST00000553950 STRIP1Q5VSL9 837 aa17.53■□□□□ 0.4
SHMT2-210ENST00000553950 DBNDD1Q9H9R9 158 aa17.53■□□□□ 0.4
SHMT2-210ENST00000553950 LRP2BPQ9P2M1 347 aa17.53■□□□□ 0.4
SHMT2-210ENST00000553950 IQSEC3Q9UPP2 1182 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-210ENST00000553950 LMNB1P20700 586 aa17.52■□□□□ 0.4
SHMT2-210ENST00000553950 PI16Q6UXB8 463 aa17.52■□□□□ 0.4
SHMT2-210ENST00000553950 ERICH6Q7L0X2 663 aa17.52■□□□□ 0.4
SHMT2-210ENST00000553950 USP17L3A6NCW0 530 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 USP17L4A6NCW7 530 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 IDH1O75874 414 aaKnown RBP17.51■□□□□ 0.39
SHMT2-210ENST00000553950 MFAP1P55081 439 aaKnown RBP17.51■□□□□ 0.39
SHMT2-210ENST00000553950 GSTO1P78417 241 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 DOK7Q18PE1 504 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 ARHGAP27Q6ZUM4 889 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 USP17L1Q7RTZ2 530 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 SLF2Q8IX21 1173 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 ABCF2Q9UG63 623 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 ZNRF3Q9ULT6 936 aa17.51■□□□□ 0.39
SHMT2-210ENST00000553950 LDHBP07195 334 aaKnown RBP17.5■□□□□ 0.39
SHMT2-210ENST00000553950 GTF2IP78347 998 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 RASSF7Q02833 373 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 GPR162Q16538 588 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 MFSD14BQ5SR56 506 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 TTLL5Q6EMB2 1281 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 TBC1D9Q6ZT07 1266 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 DZIP1Q86YF9 867 aaKnown RBP17.5■□□□□ 0.39
SHMT2-210ENST00000553950 CERS3Q8IU89 383 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 FBXW7Q969H0 707 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 EDC3Q96F86 508 aaKnown RBP17.5■□□□□ 0.39
SHMT2-210ENST00000553950 NDUFB9Q9Y6M9 179 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 COL4A5P29400 1685 aa17.5■□□□□ 0.39
SHMT2-210ENST00000553950 ZC3H4Q9UPT8 1303 aaKnown RBP17.49■□□□□ 0.39
SHMT2-210ENST00000553950 RNF113AO15541 343 aaKnown RBP17.49■□□□□ 0.39
SHMT2-210ENST00000553950 CHMLP26374 656 aa17.49■□□□□ 0.39
SHMT2-210ENST00000553950 UBE3CQ15386 1083 aa17.49■□□□□ 0.39
SHMT2-210ENST00000553950 APPBP2Q92624 585 aa17.49■□□□□ 0.39
SHMT2-210ENST00000553950 ANTXR1Q9H6X2 564 aa17.49■□□□□ 0.39
SHMT2-210ENST00000553950 PIH1D3Q9NQM4 214 aaKnown RBP17.49■□□□□ 0.39
SHMT2-210ENST00000553950 RAI14Q9P0K7 980 aa17.49■□□□□ 0.39
SHMT2-210ENST00000553950 DCAF8L1A6NGE4 600 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 REC8O95072 547 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 YBX3P16989 372 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHMT2-210ENST00000553950 ADD2P35612 726 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 MMP14P50281 582 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 EIF6P56537 245 aaKnown RBP17.48■□□□□ 0.39
SHMT2-210ENST00000553950 TNIP1Q15025 636 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 SLC9C2Q5TAH2 1124 aa17.48■□□□□ 0.39
SHMT2-210ENST00000553950 UPF2Q9HAU5 1272 aaKnown RBP17.48■□□□□ 0.39
SHMT2-210ENST00000553950 HELLSQ9NRZ9 838 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms