RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 IL17REQ8NFR9 667 aa8.62□□□□□ -1.03
VIPAS39-205ENST00000553691 FOXN1O15353 648 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 VEGFAP15692 232 aaPredicted RBP8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 DZIP3Q86Y13 1208 aaKnown RBP8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 CCDC116Q8IYX3 515 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 TRIM47Q96LD4 638 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 ZFP42Q96MM3 310 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 PURBQ96QR8 312 aaKnown RBP8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 CCDC87Q9NVE4 849 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 MKRN1Q9UHC7 482 aaKnown RBP8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 GPSM3Q9Y4H4 160 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 CCDC88AQ3V6T2 1871 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 C10orf71Q711Q0 1435 aa8.61□□□□□ -1.03
VIPAS39-205ENST00000553691 U2SURPO15042 1029 aaKnown RBP8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 PTCD1O75127 700 aaKnown RBP8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 FBXO45P0C2W1 286 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 DPEP1P16444 411 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 PRKAR2BP31323 418 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 SLC39A6Q13433 755 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 C6orf118Q5T5N4 469 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 INTS5Q6P9B9 1019 aaKnown RBP8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 PIM2Q9P1W9 311 aa8.6□□□□□ -1.03
VIPAS39-205ENST00000553691 PXDNLA1KZ92 1463 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 CCDC85CA6NKD9 419 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 GPR37L1O60883 481 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 RPS6KA4O75676 772 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 CRKLP46109 303 aaKnown RBP8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 RGS19P49795 217 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 DALRD3Q5D0E6 543 aaKnown RBP8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 INTS6LQ5JSJ4 861 aaKnown RBP8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 PPP1R26Q5T8A7 1209 aaPredicted RBP8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 MRPL14Q6P1L8 145 aaKnown RBP8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 DNAJC10Q8IXB1 793 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 NLGN1Q8N2Q7 840 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 PLEKHF1Q96S99 279 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 SENP2Q9HC62 589 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 PCDHB9Q9Y5E1 797 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 PARP3Q9Y6F1 533 aa8.59□□□□□ -1.03
VIPAS39-205ENST00000553691 NRXN2Q9P2S2 1712 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 ZBBXA8MT70 800 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 CYP19A1P11511 503 aaPredicted RBP8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 CBLBQ13191 982 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 GAS2L2Q8NHY3 880 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 TBC1D2BQ9UPU7 963 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 NDUFB9Q9Y6M9 179 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 KDM3BQ7LBC6 1761 aa8.58□□□□□ -1.04
VIPAS39-205ENST00000553691 SOS1Q07889 1333 aaPredicted RBP8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 SCN7AQ01118 1682 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 SOBPA7XYQ1 873 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 GNAT3A8MTJ3 354 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 KCNQ3O43525 872 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 U2AF1L5P0DN76 240 aaPredicted RBP8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 GYS1P13807 737 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 LBX1P52954 281 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 U2AF1Q01081 240 aaKnown RBP eCLIP8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 CFAP53Q96M91 514 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 TMPRSS4Q9NRS4 437 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 RTCBQ9Y3I0 505 aaKnown RBP8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 TIAM2Q8IVF5 1701 aa8.57□□□□□ -1.04
VIPAS39-205ENST00000553691 USP42Q9H9J4 1324 aaKnown RBP8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 GLTPD2A6NH11 291 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 DDX10Q13206 875 aaKnown RBP8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 SCARF1Q14162 830 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 TRAPPC3LQ5T215 181 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 KIFC2Q96AC6 838 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 ZNF496Q96IT1 587 aaPredicted RBP8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 SRP68Q9UHB9 627 aaKnown RBP8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 ZBTB1Q9Y2K1 713 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 HEG1Q9ULI3 1381 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 AFDNP55196 1824 aaKnown RBP8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 LAMB4A4D0S4 1761 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 BCORQ6W2J9 1755 aa8.56□□□□□ -1.04
VIPAS39-205ENST00000553691 DCTN1Q14203 1278 aa8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 NBPF20Q3BBV1 942 aa8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 ZNF790Q6PG37 636 aa8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 MCM10Q7L590 875 aa8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 CDV3Q9UKY7 258 aaKnown RBP8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 NUDCQ9Y266 331 aa8.55□□□□□ -1.04
VIPAS39-205ENST00000553691 COL15A1P39059 1388 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 PRAMEF22A3QJZ6 481 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 BMP2P12643 396 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 RFC4P35249 363 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 DDR1Q08345 913 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 NR1H3Q13133 447 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 RALBP1Q15311 655 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 LINC00528Q8N1L1 170 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 MEIOBQ8N635 442 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 PGPEP1Q9NXJ5 209 aa8.54□□□□□ -1.04
VIPAS39-205ENST00000553691 ERVH48-1M5A8F1 160 aa8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 LMNB1P20700 586 aa8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 EIF5P55010 431 aaKnown RBP8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 AGBL1Q96MI9 1066 aa8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 ANKRD31Q8N7Z5 1873 aa8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 DLEC1Q9Y238 1755 aa8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 MYBBP1AQ9BQG0 1328 aaKnown RBP8.53□□□□□ -1.04
VIPAS39-205ENST00000553691 CNTNAP1P78357 1384 aa8.52□□□□□ -1.05
VIPAS39-205ENST00000553691 APBB1O00213 710 aa8.52□□□□□ -1.05
VIPAS39-205ENST00000553691 POLRMTO00411 1230 aaKnown RBP8.52□□□□□ -1.05
VIPAS39-205ENST00000553691 HTATSF1O43719 755 aaKnown RBP8.52□□□□□ -1.05
VIPAS39-205ENST00000553691 UPP2O95045 317 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms