RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 HIRAP54198 1017 aaPredicted RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 HUNKP57058 714 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 KCNA1Q09470 495 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 HABP4Q5JVS0 413 aaKnown RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 TPTE2Q6XPS3 522 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 SAMD7Q7Z3H4 446 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 CTU1Q7Z7A3 348 aaKnown RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 NIM1KQ8IY84 436 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 TEX13AQ9BXU3 409 aaPredicted RBP8.79□□□□□ -1
LIMA1-204ENST00000549064 RNF186Q9NXI6 227 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 HPS5Q9UPZ3 1129 aa8.79□□□□□ -1
LIMA1-204ENST00000549064 NIP7Q9Y221 180 aaKnown RBP eCLIP8.79□□□□□ -1
LIMA1-204ENST00000549064 NPC1L1Q9UHC9 1359 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 SHTN1A0MZ66 631 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 SNPHO15079 494 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 GMPSP49915 693 aaPredicted RBP8.78□□□□□ -1
LIMA1-204ENST00000549064 KIF23Q02241 960 aaPredicted RBP8.78□□□□□ -1
LIMA1-204ENST00000549064 CXCL9Q07325 125 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 SEMA3FQ13275 785 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 AOC3Q16853 763 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 MAMSTRQ6ZN01 415 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 MORC1Q86VD1 984 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 NBPF15Q8N660 670 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 TRPM4Q8TD43 1214 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 USP16Q9Y5T5 823 aa8.78□□□□□ -1
LIMA1-204ENST00000549064 PATL2C9JE40 543 aaKnown RBP8.77□□□□□ -1.01
LIMA1-204ENST00000549064 PPIP5K2O43314 1243 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 SOX11P35716 441 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 TEFQ10587 303 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 DMRTA1Q5VZB9 504 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 RGMBQ6NW40 437 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 CLEC4GQ6UXB4 293 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 TBC1D9Q6ZT07 1266 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 USP48Q86UV5 1035 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 IL17REQ8NFR9 667 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 GCC1Q96CN9 775 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 FMNL2Q96PY5 1086 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 SAGE1Q9NXZ1 904 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 PGAP2Q9UHJ9 254 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 ZNF652Q9Y2D9 606 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 MAFBQ9Y5Q3 323 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-204ENST00000549064 NUP98P52948 1817 aa8.77□□□□□ -1.01
LIMA1-204ENST00000549064 GTF2E1P29083 439 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-204ENST00000549064 HLFQ16534 295 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 CRY2Q49AN0 593 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 CC2D2BQ6DHV5 1058 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 POTEEQ6S8J3 1075 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 CDC37L1Q7L3B6 337 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 ZNF428Q96B54 188 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 PANK3Q9H999 370 aa8.76□□□□□ -1.01
LIMA1-204ENST00000549064 ARHGAP33O14559 1287 aa8.75□□□□□ -1.01
LIMA1-204ENST00000549064 PPEF1O14829 653 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-204ENST00000549064 PUS10Q3MIT2 529 aaKnown RBP8.75□□□□□ -1.01
LIMA1-204ENST00000549064 GBA2Q9HCG7 927 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-204ENST00000549064 IVNS1ABPQ9Y6Y0 642 aa8.75□□□□□ -1.01
LIMA1-204ENST00000549064 RIC1Q4ADV7 1423 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 RAD17O75943 681 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 FXR1P51114 621 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMA1-204ENST00000549064 ZNF157P51786 506 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-204ENST00000549064 NBPF10Q6P3W6 841 aaKnown RBP8.74□□□□□ -1.01
LIMA1-204ENST00000549064 RETREG3Q86VR2 466 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 RPGRQ92834 1020 aaKnown RBP8.74□□□□□ -1.01
LIMA1-204ENST00000549064 CSRNP1Q96S65 589 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 BCL2L13Q9BXK5 485 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 ZNRF3Q9ULT6 936 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 CENPFP49454 3210 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 A0A0C4DFX4 3053 aa8.74□□□□□ -1.01
LIMA1-204ENST00000549064 TAF1P21675 1872 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 ADM5C9JUS6 153 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 ATG7O95352 703 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 HOXA10P31260 410 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-204ENST00000549064 RBM25P49756 843 aaKnown RBP8.73□□□□□ -1.01
LIMA1-204ENST00000549064 KMT5BQ4FZB7 885 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 PNMA1Q8ND90 353 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 SLC4A5Q9BY07 1137 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 VRTNQ9H8Y1 702 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 CNOT7Q9UIV1 285 aaKnown RBP8.73□□□□□ -1.01
LIMA1-204ENST00000549064 LAMB2P55268 1798 aa8.73□□□□□ -1.01
LIMA1-204ENST00000549064 LAMB4A4D0S4 1761 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 PAPPA2Q9BXP8 1791 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 BTBD11A6QL63 1104 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 YDJCA8MPS7 323 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 GNAT3A8MTJ3 354 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 EGFRP00533 1210 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 EIF4G2P78344 907 aaKnown RBP eCLIP8.72□□□□□ -1.01
LIMA1-204ENST00000549064 VARS2Q5ST30 1063 aaKnown RBP8.72□□□□□ -1.01
LIMA1-204ENST00000549064 MORN1Q5T089 497 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 KRT26Q7Z3Y9 468 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 C2orf69Q8N8R5 385 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 ZNF296Q8WUU4 475 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-204ENST00000549064 RBM17Q96I25 401 aaKnown RBP8.72□□□□□ -1.01
LIMA1-204ENST00000549064 CRAMP1Q96RY5 1269 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 HDAC9Q9UKV0 1011 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 SLC27A5Q9Y2P5 690 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 KIF7Q2M1P5 1343 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 CDHR2Q9BYE9 1310 aa8.72□□□□□ -1.01
LIMA1-204ENST00000549064 ATP9BO43861 1147 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 TBC1D8O95759 1140 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 GPTP24298 496 aa8.71□□□□□ -1.02
LIMA1-204ENST00000549064 TBC1D10BQ4KMP7 808 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms