RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CCDC94Q9BW85 323 aaPredicted RBP17.57■□□□□ 0.4
USP28-214ENST00000545540 HELLSQ9NRZ9 838 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 SH3TC1Q8TE82 1336 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 GOLGA8FQ08AF8 430 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 GOLGA8DPQ0D2H9 430 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 CCDC158Q5M9N0 1113 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 SMC2O95347 1197 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 DNAJC10Q8IXB1 793 aa17.57■□□□□ 0.4
USP28-214ENST00000545540 LRRC8AQ8IWT6 810 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 DSCC1Q9BVC3 393 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 CCDC69A6NI79 296 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 HLFQ16534 295 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 STX1AQ16623 288 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 MICU3Q86XE3 530 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 FAM160A1Q05DH4 1040 aa17.56■□□□□ 0.4
USP28-214ENST00000545540 CMTR1Q8N1G2 835 aaKnown RBP17.56■□□□□ 0.4
USP28-214ENST00000545540 GPAA1O43292 621 aa17.55■□□□□ 0.4
USP28-214ENST00000545540 HMGB1P09429 215 aaKnown RBP17.55■□□□□ 0.4
USP28-214ENST00000545540 ANTXR2P58335 489 aa17.55■□□□□ 0.4
USP28-214ENST00000545540 ENGASEQ8NFI3 743 aa17.55■□□□□ 0.4
USP28-214ENST00000545540 ATP2B1P20020 1258 aa17.55■□□□□ 0.4
USP28-214ENST00000545540 LMOD1P29536 600 aaPredicted RBP17.55■□□□□ 0.4
USP28-214ENST00000545540 METTL24Q5JXM2 366 aa17.55■□□□□ 0.4
USP28-214ENST00000545540 IMMTQ16891 758 aaKnown RBP17.54■□□□□ 0.4
USP28-214ENST00000545540 NAA16Q6N069 864 aaPredicted RBP17.54■□□□□ 0.4
USP28-214ENST00000545540 RALYLQ86SE5 291 aaKnown RBP17.54■□□□□ 0.4
USP28-214ENST00000545540 ZRSR1Q15695 479 aaKnown RBP17.54■□□□□ 0.4
USP28-214ENST00000545540 SLC9C2Q5TAH2 1124 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 LDHAL6AQ6ZMR3 332 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 ZNF396Q96N95 335 aaPredicted RBP17.54■□□□□ 0.4
USP28-214ENST00000545540 CLIC6Q96NY7 704 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 GREM2Q9H772 168 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 HPS5Q9UPZ3 1129 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 ZBTB9Q96C00 473 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 ZKSCAN3Q9BRR0 538 aa17.54■□□□□ 0.4
USP28-214ENST00000545540 B4E1Z4 1266 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 ZNF213O14771 459 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 NCBP1Q09161 790 aaKnown RBP17.53■□□□□ 0.4
USP28-214ENST00000545540 MRPS27Q92552 414 aaKnown RBP17.53■□□□□ 0.4
USP28-214ENST00000545540 IFNKQ9P0W0 207 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 SLIT3O75094 1523 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 MCAMP43121 646 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 EVA1CP58658 441 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 LLPHQ9BRT6 129 aaKnown RBP17.53■□□□□ 0.4
USP28-214ENST00000545540 TOMM22Q9NS69 142 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 TPM3P06753 285 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 ATP1A3P13637 1013 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 GTF2F1P35269 517 aaKnown RBP eCLIP17.53■□□□□ 0.4
USP28-214ENST00000545540 IFIT5Q13325 482 aaKnown RBP17.53■□□□□ 0.4
USP28-214ENST00000545540 FMR1NBQ8N0W7 255 aaPredicted RBP17.53■□□□□ 0.4
USP28-214ENST00000545540 CCDC191Q8NCU4 936 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 CNNM1Q9NRU3 951 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 TBC1D2BQ9UPU7 963 aa17.53■□□□□ 0.4
USP28-214ENST00000545540 RRP12Q5JTH9 1297 aaKnown RBP17.52■□□□□ 0.4
USP28-214ENST00000545540 CEP135Q66GS9 1140 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 SYNE3Q6ZMZ3 975 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 LINC00301Q8NCQ3 95 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 IQSEC3Q9UPP2 1182 aaPredicted RBP17.52■□□□□ 0.4
USP28-214ENST00000545540 WDHD1O75717 1129 aaPredicted RBP17.52■□□□□ 0.4
USP28-214ENST00000545540 CYB5R4Q7L1T6 521 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 TMC6Q7Z403 805 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 CCDC112Q8NEF3 446 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 XPO4Q9C0E2 1151 aaKnown RBP17.52■□□□□ 0.4
USP28-214ENST00000545540 TMX1Q9H3N1 280 aa17.52■□□□□ 0.4
USP28-214ENST00000545540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.52■□□□□ 0.42e-6■■■■□ 19.4
USP28-214ENST00000545540 GNL2Q13823 731 aaKnown RBP17.52■□□□□ 0.39
USP28-214ENST00000545540 ANO10Q9NW15 660 aa17.52■□□□□ 0.39
USP28-214ENST00000545540 SALL1Q9NSC2 1324 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 SPTLC2O15270 562 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 TBC1D10CQ8IV04 446 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 CEP57L1Q8IYX8 460 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 CHMP4CQ96CF2 233 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 OVOS2A0A0G2JMS6 1433 aa17.51■□□□□ 0.39
USP28-214ENST00000545540 AFDNP55196 1824 aaKnown RBP17.51■□□□□ 0.39
USP28-214ENST00000545540 ZNF274Q96GC6 653 aaPredicted RBP17.51■□□□□ 0.39
USP28-214ENST00000545540 ZNF202O95125 648 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 ITGA6P23229 1130 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 CDC27P30260 824 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 MYSM1Q5VVJ2 828 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 FBXO18Q8NFZ0 1043 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 PIH1D3Q9NQM4 214 aaKnown RBP17.5■□□□□ 0.39
USP28-214ENST00000545540 PHKA1P46020 1223 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 CTDSPL2Q05D32 466 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 TCIRG1Q13488 830 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 NFXL1Q6ZNB6 911 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 FAM177A1Q8N128 213 aaPredicted RBP17.5■□□□□ 0.39
USP28-214ENST00000545540 NBPF3Q9H094 633 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 ZNF215Q9UL58 517 aaPredicted RBP17.5■□□□□ 0.39
USP28-214ENST00000545540 WWC3Q9ULE0 1092 aa17.5■□□□□ 0.39
USP28-214ENST00000545540 SMIM22K7EJ46 135 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 NBPF11Q86T75 865 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 AGXT2Q9BYV1 514 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 PTPN14Q15678 1187 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 NCOA7Q8NI08 942 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 KIAA1468Q9P260 1216 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 MROH7-TTC4A0A0A0MT08 1334 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 USP54Q70EL1 1684 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 FOXN1O15353 648 aa17.49■□□□□ 0.39
USP28-214ENST00000545540 SLC3A2P08195 630 aaKnown RBP17.49■□□□□ 0.39
USP28-214ENST00000545540 PDIA4P13667 645 aaKnown RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms