RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 APPBP2Q92624 585 aa17.08■□□□□ 0.32
VPS33A-209ENST00000544349 TTC14Q96N46 770 aa17.08■□□□□ 0.32
VPS33A-209ENST00000544349 DSCC1Q9BVC3 393 aa17.08■□□□□ 0.32
VPS33A-209ENST00000544349 WTIPA6NIX2 430 aaPredicted RBP17.07■□□□□ 0.32
VPS33A-209ENST00000544349 CASTP20810 708 aaKnown RBP17.07■□□□□ 0.32
VPS33A-209ENST00000544349 WASHC4Q2M389 1173 aa17.07■□□□□ 0.32
VPS33A-209ENST00000544349 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
VPS33A-209ENST00000544349 JAKMIP1Q96N16 626 aaKnown RBP17.07■□□□□ 0.32
VPS33A-209ENST00000544349 ANKRD2Q9GZV1 360 aa17.07■□□□□ 0.32
VPS33A-209ENST00000544349 ZSWIM6Q9HCJ5 1215 aa17.07■□□□□ 0.32
VPS33A-209ENST00000544349 TCHHQ07283 1943 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 ADD2P35612 726 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 GRAPQ13588 217 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 GRAPLQ8TC17 118 aaPredicted RBP17.06■□□□□ 0.32
VPS33A-209ENST00000544349 ZNF804BA4D1E1 1349 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 CRY2Q49AN0 593 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 VPS53Q5VIR6 699 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 GPT2Q8TD30 523 aa17.06■□□□□ 0.32
VPS33A-209ENST00000544349 RPAP1Q9BWH6 1393 aaPredicted RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 DOCK2Q92608 1830 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 IDH1O75874 414 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 HSPD1P10809 573 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 PSMA5P28066 241 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 GYG1P46976 350 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 SLC9C2Q5TAH2 1124 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 CAVIN1Q6NZI2 390 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 NLGN1Q8N2Q7 840 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 PUS7LQ9H0K6 701 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 PRPF40AO75400 957 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 BRD1O95696 1058 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 CPA1P15085 419 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 UBE3CQ15386 1083 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 RUFY3Q7L099 469 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 RPGRQ92834 1020 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 RBM27Q9P2N5 1060 aaKnown RBP17.05■□□□□ 0.32
VPS33A-209ENST00000544349 CYP46A1Q9Y6A2 500 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 TAF6LQ9Y6J9 622 aa17.05■□□□□ 0.32
VPS33A-209ENST00000544349 CAVIN4Q5BKX8 364 aa17.04■□□□□ 0.32
VPS33A-209ENST00000544349 FAM84BQ96KN1 310 aaPredicted RBP17.04■□□□□ 0.32
VPS33A-209ENST00000544349 GNL3LQ9NVN8 582 aaKnown RBP17.04■□□□□ 0.32
VPS33A-209ENST00000544349 NSFL1CQ9UNZ2 370 aaKnown RBP17.04■□□□□ 0.32
VPS33A-209ENST00000544349 CYP21A2P08686 494 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 NCLP19338 710 aaKnown RBP17.03■□□□□ 0.32
VPS33A-209ENST00000544349 AK2P54819 239 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 WWC3Q9ULE0 1092 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 PNPLA7Q6ZV29 1317 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 PDE6AP16499 860 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 KRT32Q14532 448 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 ZSCAN23Q3MJ62 389 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 PDRG1Q9NUG6 133 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 ZNF532Q9HCE3 1301 aa17.03■□□□□ 0.32
VPS33A-209ENST00000544349 TCRBV5S4A2TA0A5A2 114 aa17.02■□□□□ 0.32
VPS33A-209ENST00000544349 MAP3K12Q12852 859 aa17.02■□□□□ 0.32
VPS33A-209ENST00000544349 FBXO33Q7Z6M2 555 aa17.02■□□□□ 0.32
VPS33A-209ENST00000544349 INTS4Q96HW7 963 aaKnown RBP17.02■□□□□ 0.32
VPS33A-209ENST00000544349 KLRG2A4D1S0 409 aaPredicted RBP17.02■□□□□ 0.31
VPS33A-209ENST00000544349 GPAA1O43292 621 aa17.02■□□□□ 0.31
VPS33A-209ENST00000544349 VPS37DQ86XT2 251 aa17.02■□□□□ 0.31
VPS33A-209ENST00000544349 RBM17Q96I25 401 aaKnown RBP17.02■□□□□ 0.31
VPS33A-209ENST00000544349 CAMKK2Q96RR4 588 aa17.02■□□□□ 0.31
VPS33A-209ENST00000544349 IQSEC3Q9UPP2 1182 aaPredicted RBP17.02■□□□□ 0.31
VPS33A-209ENST00000544349 NRXN2Q9P2S2 1712 aa17.01■□□□□ 0.31
VPS33A-209ENST00000544349 FOXP2O15409 715 aa17.01■□□□□ 0.31
VPS33A-209ENST00000544349 KLRK1P26718 216 aa17.01■□□□□ 0.31
VPS33A-209ENST00000544349 EZH2Q15910 746 aaKnown RBP17.01■□□□□ 0.31
VPS33A-209ENST00000544349 BLOC1S2Q6QNY1 142 aa17.01■□□□□ 0.31
VPS33A-209ENST00000544349 LARP6Q9BRS8 491 aaKnown RBP17.01■□□□□ 0.31
VPS33A-209ENST00000544349 HOXA10P31260 410 aaPredicted RBP17■□□□□ 0.31
VPS33A-209ENST00000544349 ZNF445P59923 1031 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 EN1Q05925 392 aaPredicted RBP17■□□□□ 0.31
VPS33A-209ENST00000544349 ZBTB4Q9P1Z0 1013 aaPredicted RBP17■□□□□ 0.31
VPS33A-209ENST00000544349 COL9A3Q14050 684 aaPredicted RBP17■□□□□ 0.31
VPS33A-209ENST00000544349 MAGEB6Q8N7X4 407 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 NEK1Q96PY6 1258 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 DENND2AQ9ULE3 1009 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 LIMCH1Q9UPQ0 1083 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 LEMD3Q9Y2U8 911 aa17■□□□□ 0.31
VPS33A-209ENST00000544349 ANKRD31Q8N7Z5 1873 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 SEMA3EO15041 775 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 RPS6KB1P23443 525 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 ALDH8A1Q9H2A2 487 aaPredicted RBP16.99■□□□□ 0.31
VPS33A-209ENST00000544349 IRS2Q9Y4H2 1338 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 COL1A1P02452 1464 aaPredicted RBP16.99■□□□□ 0.31
VPS33A-209ENST00000544349 LARGE1O95461 756 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 HIBADHP31937 336 aaKnown RBP16.99■□□□□ 0.31
VPS33A-209ENST00000544349 SLC51AQ86UW1 340 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 CRAMP1Q96RY5 1269 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 TMEM63CQ9P1W3 806 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 ANKIB1Q9P2G1 1089 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 LRP2BPQ9P2M1 347 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 CTNNA3Q9UI47 895 aa16.99■□□□□ 0.31
VPS33A-209ENST00000544349 XDHP47989 1333 aa16.98■□□□□ 0.31
VPS33A-209ENST00000544349 A0A0G2JLW4 131 aa16.98■□□□□ 0.31
VPS33A-209ENST00000544349 BBOX1O75936 387 aa16.98■□□□□ 0.31
VPS33A-209ENST00000544349 FOXD4L6Q3SYB3 417 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-209ENST00000544349 FOXD4L3Q6VB84 417 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-209ENST00000544349 BRIP1Q9BX63 1249 aa16.98■□□□□ 0.31
VPS33A-209ENST00000544349 ANO8Q9HCE9 1232 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-209ENST00000544349 FGAP02671 866 aa16.97■□□□□ 0.31
VPS33A-209ENST00000544349 MMP10P09238 476 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms