RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 PDE1CQ14123 709 aaPredicted RBP11.72□□□□□ -0.53
PCDH9-204ENST00000544246 SMARCC2Q8TAQ2 1214 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 CSRNP2Q9H175 543 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 HAND2P61296 217 aa11.72□□□□□ -0.53
PCDH9-204ENST00000544246 GIGYF1O75420 1035 aaPredicted RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 ARID4AP29374 1257 aaPredicted RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 TMPOP42166 694 aaKnown RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 TSNAXIP1Q2TAA8 658 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CCDC170Q8IYT3 715 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 AOPEPQ8N6M6 819 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 ERBINQ96RT1 1412 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CALM1P0DP23 149 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CALM2P0DP24 149 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CALM3P0DP25 149 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CNGA1P29973 690 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 UBXN1Q04323 297 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 TAF7Q15545 349 aaPredicted RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 IFIT1BQ5T764 474 aaKnown RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 B4GALNT4Q76KP1 1039 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 HDXQ7Z353 690 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 SDCCAG8Q86SQ7 713 aaPredicted RBP11.71□□□□□ -0.53
PCDH9-204ENST00000544246 CCDC26Q8TAB7 109 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 C6orf50Q9HD87 102 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 GUCA1BQ9UMX6 200 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 AGTPBP1Q9UPW5 1226 aa11.71□□□□□ -0.53
PCDH9-204ENST00000544246 DHX29Q7Z478 1369 aaKnown RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 B4DLN1 442 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 MGEA5O60502 916 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 ZSCAN22P10073 491 aaPredicted RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 MRPL12P52815 198 aaKnown RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 HSP90AA4PQ58FG1 418 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 GABPB2Q8TAK5 448 aaPredicted RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 MRPS27Q92552 414 aaKnown RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 ZNF830Q96NB3 372 aaPredicted RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 TARBP1Q13395 1621 aaKnown RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 ATAD2Q6PL18 1390 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 HCLS1P14317 486 aaPredicted RBP11.71□□□□□ -0.54
PCDH9-204ENST00000544246 SLFN5Q08AF3 891 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 FMNL3Q8IVF7 1028 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 KIFC2Q96AC6 838 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 RASSF4Q9H2L5 321 aa11.71□□□□□ -0.54
PCDH9-204ENST00000544246 ERCC5P28715 1186 aaPredicted RBP11.7□□□□□ -0.54
PCDH9-204ENST00000544246 MCM7P33993 719 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 ITIH3Q06033 890 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 FLIIQ13045 1269 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 ZNF569Q5MCW4 686 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 MCM10Q7L590 875 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 TBC1D31Q96DN5 1066 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 ALG1Q9BT22 464 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.7□□□□□ -0.54
PCDH9-204ENST00000544246 LRPPRCP42704 1394 aaKnown RBP11.7□□□□□ -0.54
PCDH9-204ENST00000544246 RHOXF2BP0C7M4 288 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 CLNS1AP54105 237 aaKnown RBP11.7□□□□□ -0.54
PCDH9-204ENST00000544246 PSMD6Q15008 389 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 ANKRD24Q8TF21 1146 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 WHAMMQ8TF30 809 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 RHOXF2Q9BQY4 288 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 CCDC186Q7Z3E2 898 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 C10orf67Q8IYJ2 551 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 TBC1D2Q9BYX2 928 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 ECHDC1Q9NTX5 307 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 KLHL40Q2TBA0 621 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 PPP1R12CQ9BZL4 782 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 KLF18A0A0U1RQI7 1052 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 GIPC1O14908 333 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 FAM160A1Q05DH4 1040 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 AMOTQ4VCS5 1084 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 SH2D4BQ5SQS7 431 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 PHLDB2Q86SQ0 1253 aa11.7□□□□□ -0.54
PCDH9-204ENST00000544246 CETN3O15182 167 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 TUBBP07437 444 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 UQCRFS1P1P0C7P4 283 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 NAPAP54920 295 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 RTN1Q16799 776 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 PRR16Q569H4 304 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 TMTC2Q8N394 836 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 CAMSAP2Q08AD1 1489 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 ZBTB43O43298 467 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 ZNF131P52739 623 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 CCDC62Q6P9F0 684 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 MCUR1Q96AQ8 359 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 SIRT1Q96EB6 747 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 CNNM2Q9H8M5 875 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 A2MP01023 1474 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 GNAQP50148 359 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 ARHGAP24Q8N264 748 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 DACT3Q96B18 629 aaPredicted RBP11.69□□□□□ -0.54
PCDH9-204ENST00000544246 ABCC10Q5T3U5 1492 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 CTTNBP2Q8WZ74 1663 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 STK10O94804 968 aaKnown RBP11.69□□□□□ -0.54
PCDH9-204ENST00000544246 IDI1Q13907 227 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 KARSQ15046 597 aaKnown RBP11.69□□□□□ -0.54
PCDH9-204ENST00000544246 CCDC89Q8N998 374 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 FAM200AQ8TCP9 573 aa11.69□□□□□ -0.54
PCDH9-204ENST00000544246 ZC3H6P61129 1189 aaKnown RBP11.68□□□□□ -0.54
PCDH9-204ENST00000544246 AFAP1L1Q8TED9 768 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 SEPT10Q9P0V9 454 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 KDM6BO15054 1643 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 RTL1A6NKG5 1358 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 HS2ST1Q7LGA3 356 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms