RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 NUP133Q8WUM0 1156 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 PCDHA7Q9UN72 937 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 KIF3AQ9Y496 699 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 TNNT1P13805 278 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 LMOD1P29536 600 aaPredicted RBP15.83■□□□□ 0.12
PTPN1-202ENST00000541713 PHKA1P46020 1223 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 PDILTQ8N807 584 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 KIAA1524Q8TCG1 905 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 PIGBQ92521 554 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 ABCF2Q9UG63 623 aa15.83■□□□□ 0.12
PTPN1-202ENST00000541713 PFKFB2O60825 505 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 FDPSP14324 419 aaKnown RBP15.82■□□□□ 0.12
PTPN1-202ENST00000541713 PPP4R3BQ5MIZ7 849 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 CLIC6Q96NY7 704 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 SMIM22K7EJ46 135 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 BRINP3Q76B58 766 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 ZBTB1Q9Y2K1 713 aa15.82■□□□□ 0.12
PTPN1-202ENST00000541713 PRKAB2O43741 272 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 MCAMP43121 646 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 BCL2L12Q9HB09 334 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 WWC3Q9ULE0 1092 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 USPL1Q5W0Q7 1092 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 SEC31BQ9NQW1 1179 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 KIF28PB7ZC32 967 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 IRS4O14654 1257 aaPredicted RBP15.81■□□□□ 0.12
PTPN1-202ENST00000541713 TCIRG1Q13488 830 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 ZSCAN25Q6NSZ9 544 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 CCDC191Q8NCU4 936 aa15.81■□□□□ 0.12
PTPN1-202ENST00000541713 MINDY4BA8MYZ0 360 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 DPCR1Q3MIW9 517 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 ARMT1Q9H993 441 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 ZHX1Q9UKY1 873 aaPredicted RBP15.8■□□□□ 0.12
PTPN1-202ENST00000541713 RGPD5Q99666 1765 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 U2AF2P26368 475 aaKnown RBP eCLIP15.8■□□□□ 0.121e-6■■■■□ 25.1
PTPN1-202ENST00000541713 ILDR1Q86SU0 546 aaPredicted RBP15.8■□□□□ 0.12
PTPN1-202ENST00000541713 IL17RAQ96F46 866 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 ZNF396Q96N95 335 aaPredicted RBP15.8■□□□□ 0.12
PTPN1-202ENST00000541713 MYRIPQ8NFW9 859 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 AIDAQ96BJ3 306 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 PIH1D3Q9NQM4 214 aaKnown RBP15.8■□□□□ 0.12
PTPN1-202ENST00000541713 HELLSQ9NRZ9 838 aa15.8■□□□□ 0.12
PTPN1-202ENST00000541713 NUTM2BA6NNL0 878 aaPredicted RBP15.79■□□□□ 0.12
PTPN1-202ENST00000541713 NUTM2EB1AL46 878 aaPredicted RBP15.79■□□□□ 0.12
PTPN1-202ENST00000541713 NUTM2AQ8IVF1 878 aaPredicted RBP15.79■□□□□ 0.12
PTPN1-202ENST00000541713 KCNJ14Q9UNX9 436 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 PCDH11XQ9BZA7 1347 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 PCDH11YQ9BZA8 1340 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 ZNF532Q9HCE3 1301 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 DYNC1I1O14576 645 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 SKILP12757 684 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 SLC26A6Q9BXS9 759 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 ZSCAN16Q9H4T2 348 aaPredicted RBP15.79■□□□□ 0.12
PTPN1-202ENST00000541713 LRRC37A3O60309 1634 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 SPATA31A3Q5VYP0 1347 aa15.79■□□□□ 0.12
PTPN1-202ENST00000541713 TMC6Q7Z403 805 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 ZNF710Q8N1W2 664 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 MAGEB6Q8N7X4 407 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 ALG1Q9BT22 464 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 CARMIL3Q8ND23 1372 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 COBLO75128 1261 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 PRDM1O75626 825 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 EXOSC10Q01780 885 aaKnown RBP15.78■□□□□ 0.12
PTPN1-202ENST00000541713 CYB5R4Q7L1T6 521 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 TBC1D10CQ8IV04 446 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 ZNF335Q9H4Z2 1342 aaPredicted RBP15.78■□□□□ 0.12
PTPN1-202ENST00000541713 NCOA7Q8NI08 942 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 IFNKQ9P0W0 207 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 SLAIN2Q9P270 581 aa15.78■□□□□ 0.12
PTPN1-202ENST00000541713 HMGB1P09429 215 aaKnown RBP15.77■□□□□ 0.12
PTPN1-202ENST00000541713 HMGN5P82970 282 aaKnown RBP15.77■□□□□ 0.12
PTPN1-202ENST00000541713 NCAPD2Q15021 1401 aa15.77■□□□□ 0.12
PTPN1-202ENST00000541713 METAP2P50579 478 aaKnown RBP eCLIP15.77■□□□□ 0.12
PTPN1-202ENST00000541713 ANTXR2P58335 489 aa15.77■□□□□ 0.12
PTPN1-202ENST00000541713 MRPS27Q92552 414 aaKnown RBP15.77■□□□□ 0.12
PTPN1-202ENST00000541713 ANKRD18BA2A2Z9 1011 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 CCDC69A6NI79 296 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 SPTLC2O15270 562 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 STARD3NLO95772 234 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 ZNF827Q17R98 1081 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 MPHOSPH8Q99549 860 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 DSCC1Q9BVC3 393 aa15.77■□□□□ 0.11
PTPN1-202ENST00000541713 IFIT3O14879 490 aaKnown RBP15.76■□□□□ 0.11
PTPN1-202ENST00000541713 STX1AQ16623 288 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 MARF1Q9Y4F3 1742 aaKnown RBP15.76■□□□□ 0.11
PTPN1-202ENST00000541713 FOXP2O15409 715 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 MBD4O95243 580 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 ATP1A3P13637 1013 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 TDO2P48775 406 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 BCAMP50895 628 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 TMEM67Q5HYA8 995 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 CEP57L1Q8IYX8 460 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 ELP1O95163 1332 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 CDC27P30260 824 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 FAM160A1Q05DH4 1040 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 SNW1Q13573 536 aaKnown RBP15.76■□□□□ 0.11
PTPN1-202ENST00000541713 AKAP2Q9Y2D5 859 aa15.76■□□□□ 0.11
PTPN1-202ENST00000541713 CACNA1FO60840 1977 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 WDR17Q8IZU2 1322 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 SLC3A2P08195 630 aaKnown RBP15.75■□□□□ 0.11
PTPN1-202ENST00000541713 DZIP3Q86Y13 1208 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms