RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 GJA5P36382 358 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 PSMC4P43686 418 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 U2AF1Q01081 240 aaKnown RBP eCLIP12.41□□□□□ -0.423e-16■■□□□ 13.9
YBX3-211ENST00000541351 AIMP1Q12904 312 aaKnown RBP12.41□□□□□ -0.42
YBX3-211ENST00000541351 COPS6Q7L5N1 327 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 BRI3BPQ8WY22 251 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 FAM89AQ96GI7 184 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 ELP3Q9H9T3 547 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 FZD1Q9UP38 647 aa12.41□□□□□ -0.42
YBX3-211ENST00000541351 IRS4O14654 1257 aaPredicted RBP12.4□□□□□ -0.42
YBX3-211ENST00000541351 ZNF697Q5TEC3 545 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 TTLL5Q6EMB2 1281 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 KIAA0825Q8IV33 1275 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 ANKRD18AQ8IVF6 992 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 MTMR14Q8NCE2 650 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 THUMPD2Q9BTF0 503 aaKnown RBP12.4□□□□□ -0.42
YBX3-211ENST00000541351 ARHGAP39Q9C0H5 1083 aa12.4□□□□□ -0.42
YBX3-211ENST00000541351 TNFRSF10AO00220 468 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 USP2O75604 605 aaPredicted RBP12.39□□□□□ -0.43
YBX3-211ENST00000541351 CC2D1BQ5T0F9 858 aaKnown RBP12.39□□□□□ -0.43
YBX3-211ENST00000541351 LRP10Q7Z4F1 713 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 C7orf61Q8IZ16 206 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 FAM43AQ8N2R8 423 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 ANKLE1Q8NAG6 615 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 XAGE3Q8WTP9 111 aa12.39□□□□□ -0.43
YBX3-211ENST00000541351 ZBED3Q96IU2 234 aaPredicted RBP12.39□□□□□ -0.43
YBX3-211ENST00000541351 OSBPP22059 807 aa12.38□□□□□ -0.43
YBX3-211ENST00000541351 HOXD11P31277 338 aaPredicted RBP12.38□□□□□ -0.43
YBX3-211ENST00000541351 FCGRTP55899 365 aa12.38□□□□□ -0.43
YBX3-211ENST00000541351 SNAPC2Q13487 334 aa12.38□□□□□ -0.43
YBX3-211ENST00000541351 MAFAQ8NHW3 353 aaPredicted RBP12.38□□□□□ -0.43
YBX3-211ENST00000541351 CDC5LQ99459 802 aaKnown RBP12.38□□□□□ -0.43
YBX3-211ENST00000541351 VEZTQ9HBM0 779 aa12.38□□□□□ -0.43
YBX3-211ENST00000541351 MAGEA10P43363 369 aaPredicted RBP12.37□□□□□ -0.43
YBX3-211ENST00000541351 MAP3K9P80192 1104 aa12.37□□□□□ -0.43
YBX3-211ENST00000541351 PDIA6Q15084 440 aa12.37□□□□□ -0.43
YBX3-211ENST00000541351 PLBD2Q8NHP8 589 aa12.37□□□□□ -0.43
YBX3-211ENST00000541351 ZMYND8Q9ULU4 1186 aaPredicted RBP12.37□□□□□ -0.43
YBX3-211ENST00000541351 ADGRA2Q96PE1 1338 aa12.37□□□□□ -0.43
YBX3-211ENST00000541351 TTC28Q96AY4 2481 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 SSC5DA1L4H1 1573 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 POTEB2H3BUK9 544 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 NBPF12Q5TAG4 269 aaPredicted RBP12.36□□□□□ -0.43
YBX3-211ENST00000541351 PAWRQ96IZ0 340 aaKnown RBP12.36□□□□□ -0.43
YBX3-211ENST00000541351 GUCD1Q96NT3 240 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 UNC93B1Q9H1C4 597 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 TSPYL4Q9UJ04 414 aa12.36□□□□□ -0.43
YBX3-211ENST00000541351 TMEM265A0A087WTH1 108 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 TNNI2P48788 182 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 TRIM28Q13263 835 aaKnown RBP12.35□□□□□ -0.43
YBX3-211ENST00000541351 RASA3Q14644 834 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 TJAP1Q5JTD0 557 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 C17orf99Q6UX52 265 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 ERO1BQ86YB8 467 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 ZBTB38Q8NAP3 1195 aaPredicted RBP12.35□□□□□ -0.43
YBX3-211ENST00000541351 PXYLP1Q8TE99 480 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 HOOK2Q96ED9 719 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 DEFB118Q96PH6 123 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 ISCA1Q9BUE6 129 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 MXD3Q9BW11 206 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 NBPF3Q9H094 633 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 BABAM1Q9NWV8 329 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 LEMD3Q9Y2U8 911 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 VCANP13611 3396 aa12.35□□□□□ -0.43
YBX3-211ENST00000541351 BTBD19C9JJ37 291 aa12.34□□□□□ -0.43
YBX3-211ENST00000541351 VGLL4Q14135 290 aa12.34□□□□□ -0.43
YBX3-211ENST00000541351 RTL5Q5HYW3 569 aaPredicted RBP12.34□□□□□ -0.43
YBX3-211ENST00000541351 SEC31BQ9NQW1 1179 aa12.34□□□□□ -0.43
YBX3-211ENST00000541351 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
YBX3-211ENST00000541351 CLRN2A0PK11 232 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 SPDYE2BA6NHP3 402 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 SPDYE5A6NIY4 337 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 ADCY3O60266 1144 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 PDE8AO60658 829 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 ANXA1P04083 346 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 SPDYE6P0CI01 402 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 HSPA5P11021 654 aaKnown RBP12.33□□□□□ -0.44
YBX3-211ENST00000541351 CCT4P50991 539 aaKnown RBP12.33□□□□□ -0.44
YBX3-211ENST00000541351 RBM5P52756 815 aaKnown RBP eCLIP12.33□□□□□ -0.44
YBX3-211ENST00000541351 GTF2IP78347 998 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 PROSER3Q2NL68 480 aa12.33□□□□□ -0.44
YBX3-211ENST00000541351 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.33□□□□□ -0.44
YBX3-211ENST00000541351 PNNQ9H307 717 aaKnown RBP12.33□□□□□ -0.44
YBX3-211ENST00000541351 ECM2O94769 699 aaPredicted RBP12.32□□□□□ -0.44
YBX3-211ENST00000541351 INHAP05111 366 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 PRKCZQ05513 592 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 CFAP100Q494V2 611 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 ANKRD23Q86SG2 305 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 CNKSR2Q8WXI2 1034 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 PARK7Q99497 189 aaKnown RBP12.32□□□□□ -0.44
YBX3-211ENST00000541351 CRISPLD2Q9H0B8 497 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 PAK6Q9NQU5 681 aaPredicted RBP12.32□□□□□ -0.44
YBX3-211ENST00000541351 BSDC1Q9NW68 430 aaPredicted RBP12.32□□□□□ -0.44
YBX3-211ENST00000541351 CPA4Q9UI42 421 aa12.32□□□□□ -0.44
YBX3-211ENST00000541351 ATP5J2-PTCD1G3V325 749 aa12.31□□□□□ -0.44
YBX3-211ENST00000541351 SYN1P17600 705 aa12.31□□□□□ -0.44
YBX3-211ENST00000541351 KCNJ4P48050 445 aa12.31□□□□□ -0.44
YBX3-211ENST00000541351 PPIL2Q13356 520 aa12.31□□□□□ -0.44
YBX3-211ENST00000541351 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.31□□□□□ -0.44
YBX3-211ENST00000541351 FAM161BQ96MY7 647 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms