RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TIE1P35590 1138 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 KCNJ4P48050 445 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 UBE4AQ14139 1066 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 DPP8Q6V1X1 898 aaPredicted RBP11.46□□□□□ -0.57
DDX55-208ENST00000541259 GGA1Q9UJY5 639 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 LEMD3Q9Y2U8 911 aa11.46□□□□□ -0.57
DDX55-208ENST00000541259 SBF1O95248 1867 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 C6orf229H3BNL8 230 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 RIMBP2O15034 1052 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 IFIT1P09914 478 aaKnown RBP11.45□□□□□ -0.58
DDX55-208ENST00000541259 MX1P20591 662 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 GYG1P46976 350 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 BCAMP50895 628 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 PDE1AP54750 535 aa11.45□□□□□ -0.58
DDX55-208ENST00000541259 TMX4Q9H1E5 349 aaPredicted RBP11.45□□□□□ -0.58
DDX55-208ENST00000541259 PHKA1P46020 1223 aa11.44□□□□□ -0.58
DDX55-208ENST00000541259 CCDC93Q567U6 631 aa11.44□□□□□ -0.58
DDX55-208ENST00000541259 CC2D2BQ6DHV5 1058 aa11.44□□□□□ -0.58
DDX55-208ENST00000541259 FAM84BQ96KN1 310 aaPredicted RBP11.44□□□□□ -0.58
DDX55-208ENST00000541259 STAP2Q9UGK3 403 aa11.44□□□□□ -0.58
DDX55-208ENST00000541259 TRPC6Q9Y210 931 aa11.44□□□□□ -0.58
DDX55-208ENST00000541259 SCN9AQ15858 1988 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 GORABQ5T7V8 394 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 CCDC102BQ68D86 513 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 FBXO33Q7Z6M2 555 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 RTKN2Q8IZC4 609 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 PI4K2BQ8TCG2 481 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 RTFDC1Q9BY42 306 aaPredicted RBP11.43□□□□□ -0.58
DDX55-208ENST00000541259 ECHDC1Q9NTX5 307 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 IQSEC3Q9UPP2 1182 aaPredicted RBP11.43□□□□□ -0.58
DDX55-208ENST00000541259 NDUFB9Q9Y6M9 179 aa11.43□□□□□ -0.58
DDX55-208ENST00000541259 GTPBP6O43824 516 aaPredicted RBP11.42□□□□□ -0.58
DDX55-208ENST00000541259 YBX3P16989 372 aaKnown RBP eCLIP11.42□□□□□ -0.58
DDX55-208ENST00000541259 SCARF1Q14162 830 aa11.42□□□□□ -0.58
DDX55-208ENST00000541259 TTC39AQ5SRH9 613 aa11.42□□□□□ -0.58
DDX55-208ENST00000541259 C15orf52Q6ZUT6 534 aaKnown RBP11.42□□□□□ -0.58
DDX55-208ENST00000541259 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
DDX55-208ENST00000541259 EFCAB3Q8N7B9 438 aa11.42□□□□□ -0.58
DDX55-208ENST00000541259 BOLA2Q9H3K6 86 aa11.42□□□□□ -0.58
DDX55-208ENST00000541259 OSBPL3Q9H4L5 887 aa11.42□□□□□ -0.58
DDX55-208ENST00000541259 DICER1Q9UPY3 1922 aaKnown RBP11.42□□□□□ -0.58
DDX55-208ENST00000541259 MED23Q9ULK4 1368 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 TTC41PQ6P2S7 1318 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 MYH7P12883 1935 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 NFKBIEO00221 500 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 MAP4K4O95819 1239 aaPredicted RBP11.41□□□□□ -0.58
DDX55-208ENST00000541259 ATP5JP18859 108 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 HIBADHP31937 336 aaKnown RBP11.41□□□□□ -0.58
DDX55-208ENST00000541259 FKBP4Q02790 459 aaKnown RBP eCLIP11.41□□□□□ -0.58
DDX55-208ENST00000541259 RASSF7Q02833 373 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
DDX55-208ENST00000541259 AOC3Q16853 763 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 DOK7Q18PE1 504 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 WASHC4Q2M389 1173 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 GRIPAP1Q4V328 841 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 CCDC158Q5M9N0 1113 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 SOGA3Q5TF21 947 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 PI16Q6UXB8 463 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 PSMD1Q99460 953 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 SNRKQ9NRH2 765 aa11.41□□□□□ -0.58
DDX55-208ENST00000541259 ZNF277Q9NRM2 450 aaPredicted RBP11.41□□□□□ -0.58
DDX55-208ENST00000541259 ZNF646O15015 1829 aaPredicted RBP11.41□□□□□ -0.58
DDX55-208ENST00000541259 COL4A5P29400 1685 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 PSME4Q14997 1843 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 GSPT1P15170 499 aaKnown RBP11.4□□□□□ -0.58
DDX55-208ENST00000541259 ARID4AP29374 1257 aaPredicted RBP11.4□□□□□ -0.58
DDX55-208ENST00000541259 MCAMP43121 646 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 PRELPP51888 382 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 CAVIN4Q5BKX8 364 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 TTC22Q5TAA0 569 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 ARHGAP27Q6ZUM4 889 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 SUPT20HQ8NEM7 779 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 EDC3Q96F86 508 aaKnown RBP11.4□□□□□ -0.58
DDX55-208ENST00000541259 GPATCH3Q96I76 525 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 EYA3Q99504 573 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 ZC3H12CQ9C0D7 883 aaKnown RBP11.4□□□□□ -0.58
DDX55-208ENST00000541259 CD209Q9NNX6 404 aa11.4□□□□□ -0.58
DDX55-208ENST00000541259 AOX1Q06278 1338 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 COL1A1P02452 1464 aaPredicted RBP11.39□□□□□ -0.59
DDX55-208ENST00000541259 TTLL13PA6NNM8 815 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 ERC2O15083 957 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 PPIP5K2O43314 1243 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 GLRX3O76003 335 aaKnown RBP11.39□□□□□ -0.59
DDX55-208ENST00000541259 UQCRFS1P1P0C7P4 283 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 KIAA2012Q0VF49 1180 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 RASGRF1Q13972 1273 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 ZNF804AQ7Z570 1209 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 VPS37DQ86XT2 251 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 TDRD7Q8NHU6 1098 aaKnown RBP11.39□□□□□ -0.59
DDX55-208ENST00000541259 ZNF512BQ96KM6 892 aaPredicted RBP11.39□□□□□ -0.59
DDX55-208ENST00000541259 TAOK3Q9H2K8 898 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 DBNDD1Q9H9R9 158 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 KCNQ5Q9NR82 932 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 HMG20BQ9P0W2 317 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 JAG2Q9Y219 1238 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 DOCK2Q92608 1830 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 UTRNP46939 3433 aa11.39□□□□□ -0.59
DDX55-208ENST00000541259 GABBR2O75899 941 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 IL1R1P14778 569 aa11.38□□□□□ -0.59
DDX55-208ENST00000541259 IARSP41252 1262 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms