RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 AS3MTQ9HBK9 375 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 ANO10Q9NW15 660 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 SAP30BPQ9UHR5 308 aaKnown RBP16.34■□□□□ 0.21
COLCA1-204ENST00000540738 ASAP1Q9ULH1 1129 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 GJB2P29033 226 aa16.34■□□□□ 0.21
COLCA1-204ENST00000540738 TNPO1Q92973 898 aaKnown RBP16.34■□□□□ 0.21
COLCA1-204ENST00000540738 ARHGEF6Q15052 776 aa16.33■□□□□ 0.21
COLCA1-204ENST00000540738 RAB11FIP4Q86YS3 637 aa16.33■□□□□ 0.21
COLCA1-204ENST00000540738 APPBP2Q92624 585 aa16.33■□□□□ 0.21
COLCA1-204ENST00000540738 SUCLG2Q96I99 432 aa16.33■□□□□ 0.21
COLCA1-204ENST00000540738 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.33■□□□□ 0.2
COLCA1-204ENST00000540738 ZBTB40Q9NUA8 1239 aa16.33■□□□□ 0.2
COLCA1-204ENST00000540738 GTF2IP78347 998 aa16.33■□□□□ 0.2
COLCA1-204ENST00000540738 ZNF594Q96JF6 807 aaPredicted RBP16.33■□□□□ 0.2
COLCA1-204ENST00000540738 PRR36Q9H6K5 1346 aa16.33■□□□□ 0.2
COLCA1-204ENST00000540738 ERLIN2O94905 339 aa16.33■□□□□ 0.2
COLCA1-204ENST00000540738 KIF22Q14807 665 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 MFSD14BQ5SR56 506 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 CCDC174Q6PII3 467 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 SSFA2P28290 1259 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 IRX3P78415 501 aaPredicted RBP16.32■□□□□ 0.2
COLCA1-204ENST00000540738 PABPC4Q13310 644 aaKnown RBP eCLIP16.32■□□□□ 0.2
COLCA1-204ENST00000540738 CCDC181Q5TID7 509 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 SPATA5Q8NB90 893 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 TTF2Q9UNY4 1162 aaKnown RBP16.32■□□□□ 0.2
COLCA1-204ENST00000540738 PCDHB15Q9Y5E8 787 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 ABCA9Q8IUA7 1624 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 ADCY10Q96PN6 1610 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 ZBED4O75132 1171 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 SLC5A4Q9NY91 659 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 FBXO3Q9UK99 471 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 BLMP54132 1417 aaPredicted RBP16.32■□□□□ 0.2
COLCA1-204ENST00000540738 BBOX1O75936 387 aa16.32■□□□□ 0.2
COLCA1-204ENST00000540738 TNS3Q68CZ2 1445 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 TNNT3P45378 269 aaPredicted RBP16.31■□□□□ 0.2
COLCA1-204ENST00000540738 DBNDD2Q9BQY9 259 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 KDRP35968 1356 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 IGHDP01880 384 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 PPEF1O14829 653 aaPredicted RBP16.31■□□□□ 0.2
COLCA1-204ENST00000540738 OTUD7BQ6GQQ9 843 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 GIGYF2Q6Y7W6 1299 aaKnown RBP16.31■□□□□ 0.2
COLCA1-204ENST00000540738 CACNA2D4Q7Z3S7 1137 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 APBB1IPQ7Z5R6 666 aaPredicted RBP16.31■□□□□ 0.2
COLCA1-204ENST00000540738 GPHNQ9NQX3 736 aaPredicted RBP16.31■□□□□ 0.2
COLCA1-204ENST00000540738 FAM182BQ5T319 152 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 Q6ZUG5 572 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 FAM114A1Q8IWE2 563 aa16.31■□□□□ 0.2
COLCA1-204ENST00000540738 STX6O43752 255 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 KLHL10Q6JEL2 608 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 NOD1Q9Y239 953 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 SMCR8Q8TEV9 937 aaPredicted RBP16.3■□□□□ 0.2
COLCA1-204ENST00000540738 GOPCQ9HD26 462 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 CDC42BPGQ6DT37 1551 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 FSIP1Q8NA03 581 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 ERCC4Q92889 916 aaPredicted RBP16.3■□□□□ 0.2
COLCA1-204ENST00000540738 RMND1Q9NWS8 449 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 XDHP47989 1333 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 CCDC93Q567U6 631 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 DALRD3Q5D0E6 543 aaKnown RBP16.3■□□□□ 0.2
COLCA1-204ENST00000540738 TTLL7Q6ZT98 887 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 PALLDQ8WX93 1383 aa16.3■□□□□ 0.2
COLCA1-204ENST00000540738 SSR1P43307 286 aaKnown RBP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 PRKG1Q13976 671 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 VSIG10Q8N0Z9 540 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 GJD4Q96KN9 370 aaPredicted RBP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 ZBTB1Q9Y2K1 713 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 LEMD3Q9Y2U8 911 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 CFAP100Q494V2 611 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 CCDC40Q4G0X9 1142 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 DHX32Q7L7V1 743 aaKnown RBP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 AOX1Q06278 1338 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 DDX19AQ9NUU7 478 aaKnown RBP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 USP40Q9NVE5 1235 aa16.29■□□□□ 0.2
COLCA1-204ENST00000540738 AATFQ9NY61 560 aaKnown RBP eCLIP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 ATF5Q9Y2D1 282 aaPredicted RBP16.29■□□□□ 0.2
COLCA1-204ENST00000540738 CCDC102BQ68D86 513 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 TMEM87BQ96K49 555 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 ARMT1Q9H993 441 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 ZBTB7BO15156 539 aaPredicted RBP16.28■□□□□ 0.2
COLCA1-204ENST00000540738 JAKMIP3Q5VZ66 844 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 ERVV-1B6SEH8 477 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 BACH1O14867 736 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 KRT79Q5XKE5 535 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 LRRC2Q9BYS8 371 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 IBTKQ9P2D0 1353 aaPredicted RBP16.28■□□□□ 0.2
COLCA1-204ENST00000540738 OVOS2A0A0G2JMS6 1433 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 OVOS2A0A0J9YW53 1432 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 OVOS2Q6IE36 1432 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 EPB41L2O43491 1005 aaKnown RBP16.28■□□□□ 0.2
COLCA1-204ENST00000540738 MAP3K9P80192 1104 aa16.28■□□□□ 0.2
COLCA1-204ENST00000540738 ADGRB3O60242 1522 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 CA8P35219 290 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 TCERG1LQ5VWI1 586 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 TAF4BQ92750 862 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 FERMT2Q96AC1 680 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 EXOC1Q9NV70 894 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 PLA2R1Q13018 1463 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 KCNQ3O43525 872 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 SLC27A3Q5K4L6 730 aa16.27■□□□□ 0.2
COLCA1-204ENST00000540738 TRIM75PA6NK02 468 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms