RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ZNF274Q96GC6 653 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-213ENST00000540338 C8orf37Q96NL8 207 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 KRT23Q9C075 422 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 CNNM2Q9H8M5 875 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 SLC4A4Q9Y6R1 1079 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 ZBTB43O43298 467 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 FGAP02671 866 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 ATP2B1P20020 1258 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 CYP7A1P22680 504 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 CCDC102BQ68D86 513 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 LEO1Q8WVC0 666 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-213ENST00000540338 OSBP2Q969R2 916 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 TOB2Q14106 344 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-213ENST00000540338 ATL3Q6DD88 541 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 NAA16Q6N069 864 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-213ENST00000540338 BRMS1Q9HCU9 246 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 ZNF142P52746 1687 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-213ENST00000540338 MED23Q9ULK4 1368 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 ZNF532Q9HCE3 1301 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 GNAT2P19087 354 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 CCDC144CPQ8IYA2 1237 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 CEP57L1Q8IYX8 460 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 KCNB2Q92953 911 aa12.56□□□□□ -0.4
CLIP1-213ENST00000540338 ALDH8A1Q9H2A2 487 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-213ENST00000540338 CDHR2Q9BYE9 1310 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 CRKLP46109 303 aaKnown RBP12.55□□□□□ -0.4
CLIP1-213ENST00000540338 CASP7P55210 303 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SSRP1Q08945 709 aaKnown RBP12.55□□□□□ -0.4
CLIP1-213ENST00000540338 NBPF5PQ86XG9 351 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SYNE4Q8N205 404 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SPATA5Q8NB90 893 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 TMEM87AQ8NBN3 555 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 NLRP3Q96P20 1036 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SETDB2Q96T68 719 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-213ENST00000540338 M0R2C6 588 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 MBD4O95243 580 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 FAM200AQ8TCP9 573 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 G3V3G9 751 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 CAVIN2O95810 425 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 DCAF8Q5TAQ9 597 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 USPL1Q5W0Q7 1092 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 FAM208AQ9UK61 1670 aaKnown RBP12.55□□□□□ -0.4
CLIP1-213ENST00000540338 UBAP1LF5GYI3 381 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 ZNF165P49910 485 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SCRN1Q12765 414 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 SLFNL1Q499Z3 407 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 ALG1Q9BT22 464 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 PLA2G12BQ9BX93 195 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 ANO10Q9NW15 660 aa12.55□□□□□ -0.4
CLIP1-213ENST00000540338 TTC6Q86TZ1 520 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 AK7Q96M32 723 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 COL5A2P05997 1499 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-213ENST00000540338 PHKA1P46020 1223 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 TYRO3Q06418 890 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 UBE3CQ15386 1083 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 PI16Q6UXB8 463 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 IL17RAQ96F46 866 aa12.54□□□□□ -0.4
CLIP1-213ENST00000540338 THRAP3Q9Y2W1 955 aaKnown RBP12.54□□□□□ -0.4
CLIP1-213ENST00000540338 FAM98CQ17RN3 349 aaKnown RBP12.54□□□□□ -0.4
CLIP1-213ENST00000540338 ANGEL1Q9UNK9 670 aaKnown RBP12.54□□□□□ -0.4
CLIP1-213ENST00000540338 PDE6AP16499 860 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 TMTC2Q8N394 836 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 CCDC82Q8N4S0 544 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 KCNG4Q8TDN1 519 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 NYXQ9GZU5 481 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 ZKSCAN5Q9Y2L8 839 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 LRRC37A3O60309 1634 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 B4E1Z4 1266 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 PDIA3P30101 505 aaKnown RBP12.53□□□□□ -0.4
CLIP1-213ENST00000540338 WTAPQ15007 396 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 OLFM4Q6UX06 510 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 IQCA1Q86XH1 822 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 TMEM87BQ96K49 555 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 MIGA1Q8NAN2 632 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 RASSF8Q8NHQ8 419 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 SLC26A6Q9BXS9 759 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 COL15A1P39059 1388 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 PALLDQ8WX93 1383 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 RANBP6O60518 1105 aaKnown RBP12.53□□□□□ -0.4
CLIP1-213ENST00000540338 CSF1RP07333 972 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 TPM2P07951 284 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 ANO6Q4KMQ2 910 aa12.53□□□□□ -0.4
CLIP1-213ENST00000540338 ZNF609O15014 1411 aa12.52□□□□□ -0.4
CLIP1-213ENST00000540338 CHGBP05060 677 aa12.52□□□□□ -0.4
CLIP1-213ENST00000540338 TPTE2Q6XPS3 522 aa12.52□□□□□ -0.4
CLIP1-213ENST00000540338 LRP10Q7Z4F1 713 aa12.52□□□□□ -0.4
CLIP1-213ENST00000540338 PUS7LQ9H0K6 701 aaKnown RBP12.52□□□□□ -0.4
CLIP1-213ENST00000540338 ARMT1Q9H993 441 aa12.52□□□□□ -0.4
CLIP1-213ENST00000540338 MED1Q15648 1581 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-213ENST00000540338 RPAP1Q9BWH6 1393 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-213ENST00000540338 STX1AQ16623 288 aa12.52□□□□□ -0.41
CLIP1-213ENST00000540338 BRAPQ7Z569 592 aa12.52□□□□□ -0.41
CLIP1-213ENST00000540338 MRPS27Q92552 414 aaKnown RBP12.52□□□□□ -0.41
CLIP1-213ENST00000540338 ELP1O95163 1332 aa12.52□□□□□ -0.41
CLIP1-213ENST00000540338 ADD2P35612 726 aa12.52□□□□□ -0.41
CLIP1-213ENST00000540338 NSUN7Q8NE18 718 aaKnown RBP12.52□□□□□ -0.41
CLIP1-213ENST00000540338 ANKIB1Q9P2G1 1089 aa12.52□□□□□ -0.41
CLIP1-213ENST00000540338 MAGEB6P1A0A0J9YX57 407 aa12.51□□□□□ -0.41
CLIP1-213ENST00000540338 ESR2Q92731 530 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms