RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 JCADQ9P266 1359 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 ZNF496Q96IT1 587 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-237ENST00000539504 DSCC1Q9BVC3 393 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 HELLSQ9NRZ9 838 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 CRYBG1Q9Y4K1 1723 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 PSDA5PKW4 1024 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-237ENST00000539504 DHX16O60231 1041 aaKnown RBP13.04□□□□□ -0.32
SYNE1-237ENST00000539504 ATP1A3P13637 1013 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 UBASH3AP57075 661 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 NLRP12P59046 1061 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 EXOSC10Q01780 885 aaKnown RBP13.04□□□□□ -0.32
SYNE1-237ENST00000539504 HSP90AA4PQ58FG1 418 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 PDILTQ8N807 584 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 ZNF274Q96GC6 653 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-237ENST00000539504 ZNF446Q9NWS9 450 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 A0A1W2PQ27 194 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 A0A1W2PQ64 194 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 A0A1W2PQD8 194 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 RFX5P48382 616 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 GOLGA8FQ08AF8 430 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 GOLGA8DPQ0D2H9 430 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 RALYLQ86SE5 291 aaKnown RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 TIGD1Q96MW7 591 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 UTP14AQ9BVJ6 771 aaKnown RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 FDPSP14324 419 aaKnown RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 ETF1P62495 437 aaKnown RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 PXDNQ92626 1479 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 CCP110O43303 1012 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 ZC3H6P61129 1189 aaKnown RBP13.03□□□□□ -0.32
SYNE1-237ENST00000539504 HSP90AB3PQ58FF7 597 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 MYSM1Q5VVJ2 828 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 SH3TC1Q8TE82 1336 aa13.03□□□□□ -0.32
SYNE1-237ENST00000539504 PFKFB1P16118 471 aa13.02□□□□□ -0.32
SYNE1-237ENST00000539504 BBXQ8WY36 941 aaPredicted RBP13.02□□□□□ -0.32
SYNE1-237ENST00000539504 RGPD8O14715 1765 aaPredicted RBP13.02□□□□□ -0.32
SYNE1-237ENST00000539504 ANKARQ7Z5J8 1434 aa13.02□□□□□ -0.32
SYNE1-237ENST00000539504 RNF113AO15541 343 aaKnown RBP13.02□□□□□ -0.33
SYNE1-237ENST00000539504 SYKP43405 635 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 CARD6Q9BX69 1037 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 PRC1O43663 620 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 TOP1P11387 765 aaKnown RBP13.02□□□□□ -0.33
SYNE1-237ENST00000539504 IMMTQ16891 758 aaKnown RBP13.02□□□□□ -0.33
SYNE1-237ENST00000539504 ZMYM1Q5SVZ6 1142 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 TEX35Q5T0J7 233 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 ANO1Q5XXA6 986 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 L2HGDHQ9H9P8 463 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 CALCOCO1Q9P1Z2 691 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 MAST3O60307 1309 aa13.02□□□□□ -0.33
SYNE1-237ENST00000539504 YEATS4O95619 227 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 CSB-PGBD3P0DP91 1061 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 OLFM4Q6UX06 510 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 ERBB3P21860 1342 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 CBFA2T2O43439 604 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 PNMA6AP0CW24 399 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-237ENST00000539504 DHX8Q14562 1220 aaKnown RBP13.01□□□□□ -0.33
SYNE1-237ENST00000539504 FBXO18Q8NFZ0 1043 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 ZNF594Q96JF6 807 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-237ENST00000539504 UBR1Q8IWV7 1749 aa13.01□□□□□ -0.33
SYNE1-237ENST00000539504 N4BP2Q86UW6 1770 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-237ENST00000539504 SNRPA1P09661 255 aaKnown RBP13□□□□□ -0.33
SYNE1-237ENST00000539504 H2AFXP16104 143 aaPredicted RBP13□□□□□ -0.33
SYNE1-237ENST00000539504 ARHGEF25Q86VW2 580 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 SLC52A2Q9HAB3 445 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 SEC31AO94979 1220 aaKnown RBP13□□□□□ -0.33
SYNE1-237ENST00000539504 BRAPQ7Z569 592 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 POLR3EQ9NVU0 708 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 AXIN2Q9Y2T1 843 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 M0R2C6 588 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 DPF2Q92785 391 aa13□□□□□ -0.33
SYNE1-237ENST00000539504 NCAPD2Q15021 1401 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 SALL1Q9NSC2 1324 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 RXRAP19793 462 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 GNG11P61952 73 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 MAPK8IP2Q13387 824 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-237ENST00000539504 CCDC85AQ96PX6 553 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-237ENST00000539504 EPC1Q9H2F5 836 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 FHOD1Q9Y613 1164 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 SLIT1O75093 1534 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 CHD2O14647 1828 aaKnown RBP12.99□□□□□ -0.33
SYNE1-237ENST00000539504 RFX7Q2KHR2 1363 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 HEG1Q9ULI3 1381 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 EVCP57679 992 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 MYL5Q02045 173 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 PNOCQ13519 176 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 LRRC24Q50LG9 513 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 STK11IPQ8N1F8 1099 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 OSBP2Q969R2 916 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 BPIFA3Q9BQP9 254 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 AGXT2Q9BYV1 514 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 KCND1Q9NSA2 647 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 ZNF330Q9Y3S2 320 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-237ENST00000539504 KIF28PB7ZC32 967 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 ZSCAN12O43309 604 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 TUBB4AP04350 444 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 TATP17735 454 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-237ENST00000539504 CMA1P23946 247 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 NCAPHQ15003 741 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 TTC39AQ5SRH9 613 aa12.99□□□□□ -0.33
SYNE1-237ENST00000539504 A0A1B0GUL7 405 aa12.98□□□□□ -0.33
SYNE1-237ENST00000539504 TRDNQ13061 729 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms