RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 NKX2-3Q8TAU0 364 aa15.6■□□□□ 0.09
YBX3-207ENST00000539204 MS4A4AQ96JQ5 239 aa15.6■□□□□ 0.09
YBX3-207ENST00000539204 HTATIP2Q9BUP3 242 aa15.6■□□□□ 0.09
YBX3-207ENST00000539204 ELP3Q9H9T3 547 aa15.6■□□□□ 0.09
YBX3-207ENST00000539204 GNRH1P01148 92 aa15.59■□□□□ 0.09
YBX3-207ENST00000539204 PRO3102Q9H379 93 aa15.59■□□□□ 0.09
YBX3-207ENST00000539204 VEZTQ9HBM0 779 aa15.59■□□□□ 0.09
YBX3-207ENST00000539204 CCL15-CCL14A0A0B4J2E2 113 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 CLRN2A0PK11 232 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 GTF2A2P52657 109 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 PRMT2P55345 433 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 NEUROD2Q15784 382 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 CCL15Q16663 113 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 TTLL11Q8NHH1 800 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 BRI3BPQ8WY22 251 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 PRMT6Q96LA8 375 aaPredicted RBP15.58■□□□□ 0.08
YBX3-207ENST00000539204 ZNF804BA4D1E1 1349 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 SSC5DA1L4H1 1573 aa15.58■□□□□ 0.08
YBX3-207ENST00000539204 A0A1W2PPC1 479 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 CTSWP56202 376 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 RASA3Q14644 834 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 CFAP100Q494V2 611 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 DUSP27Q5VZP5 1158 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 ANKRD2Q9GZV1 360 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 GREM2Q9H772 168 aa15.57■□□□□ 0.08
YBX3-207ENST00000539204 PHAXQ9H814 394 aaKnown RBP15.57■□□□□ 0.08
YBX3-207ENST00000539204 TLR2O60603 784 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 IGHMBP2P38935 993 aaKnown RBP15.56■□□□□ 0.08
YBX3-207ENST00000539204 LACTBP83111 547 aaPredicted RBP15.56■□□□□ 0.08
YBX3-207ENST00000539204 MTFR1Q15390 333 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 FAM43AQ8N2R8 423 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 SHISA4Q96DD7 197 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 ARHGAP39Q9C0H5 1083 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 PCDHAC2Q9Y5I4 1007 aa15.56■□□□□ 0.08
YBX3-207ENST00000539204 SPDYE2BA6NHP3 402 aa15.55■□□□□ 0.08
YBX3-207ENST00000539204 F8W031 263 aaPredicted RBP15.55■□□□□ 0.08
YBX3-207ENST00000539204 SPDYE6P0CI01 402 aa15.55■□□□□ 0.08
YBX3-207ENST00000539204 RBM5P52756 815 aaKnown RBP eCLIP15.55■□□□□ 0.08
YBX3-207ENST00000539204 METTL22Q9BUU2 404 aaPredicted RBP15.55■□□□□ 0.08
YBX3-207ENST00000539204 CD209Q9NNX6 404 aa15.55■□□□□ 0.08
YBX3-207ENST00000539204 LAMA3Q16787 3333 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 KLRK1P26718 216 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 KCNJ4P48050 445 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 GJA8P48165 433 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 MAP3K9P80192 1104 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.54■□□□□ 0.08
YBX3-207ENST00000539204 CERS5Q8N5B7 392 aa15.54■□□□□ 0.08
YBX3-207ENST00000539204 SOX1O00570 391 aaPredicted RBP15.53■□□□□ 0.08
YBX3-207ENST00000539204 ZBTB7BO15156 539 aaPredicted RBP15.53■□□□□ 0.08
YBX3-207ENST00000539204 DDX58O95786 925 aaKnown RBP15.53■□□□□ 0.08
YBX3-207ENST00000539204 GJB1P08034 283 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 HOXD10P28358 340 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 TNFAIP1Q13829 316 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 CNKSR2Q8WXI2 1034 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 LRCH3Q96II8 777 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 MPHOSPH8Q99549 860 aa15.53■□□□□ 0.08
YBX3-207ENST00000539204 LAMB1P07942 1786 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 CETPP11597 493 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 UBE2Q1Q7Z7E8 422 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 HELBQ8NG08 1087 aaPredicted RBP15.52■□□□□ 0.08
YBX3-207ENST00000539204 RAET1EQ8TD07 263 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 RNF208Q9H0X6 261 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 CSADQ9Y600 493 aa15.52■□□□□ 0.08
YBX3-207ENST00000539204 EVI5O60447 810 aa15.51■□□□□ 0.07
YBX3-207ENST00000539204 ECM2O94769 699 aaPredicted RBP15.51■□□□□ 0.07
YBX3-207ENST00000539204 GRK4P32298 578 aa15.51■□□□□ 0.07
YBX3-207ENST00000539204 VGLL4Q14135 290 aa15.51■□□□□ 0.07
YBX3-207ENST00000539204 ZCCHC17Q9NP64 241 aaKnown RBP15.51■□□□□ 0.07
YBX3-207ENST00000539204 BIN2Q9UBW5 565 aaPredicted RBP15.51■□□□□ 0.07
YBX3-207ENST00000539204 SRRDQ9UH36 339 aa15.51■□□□□ 0.07
YBX3-207ENST00000539204 TRIM35Q9UPQ4 493 aa15.51■□□□□ 0.07
YBX3-207ENST00000539204 CCL5P13501 91 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 PSMC4P43686 418 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 FKBP1AP62942 108 aaKnown RBP15.5■□□□□ 0.07
YBX3-207ENST00000539204 UBXN2AP68543 259 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 TRIM47Q96LD4 638 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 STAP2Q9UGK3 403 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 MAP3K2Q9Y2U5 619 aa15.5■□□□□ 0.07
YBX3-207ENST00000539204 ZNF646O15015 1829 aaPredicted RBP15.5■□□□□ 0.07
YBX3-207ENST00000539204 AOX1Q06278 1338 aa15.49■□□□□ 0.07
YBX3-207ENST00000539204 BTBD19C9JJ37 291 aa15.49■□□□□ 0.07
YBX3-207ENST00000539204 ELL2O00472 640 aaPredicted RBP15.49■□□□□ 0.07
YBX3-207ENST00000539204 FMNL1O95466 1100 aaPredicted RBP15.49■□□□□ 0.07
YBX3-207ENST00000539204 CHRNDQ07001 517 aa15.49■□□□□ 0.07
YBX3-207ENST00000539204 GPR153Q6NV75 609 aa15.49■□□□□ 0.07
YBX3-207ENST00000539204 ZNF70Q9UC06 446 aaPredicted RBP15.49■□□□□ 0.07
YBX3-207ENST00000539204 RIPOR2Q9Y4F9 1068 aa15.49■□□□□ 0.07
YBX3-207ENST00000539204 IL1R1P14778 569 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 ITGA6P23229 1130 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 NEXNQ0ZGT2 675 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 SNAPC2Q13487 334 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 SPDYE2Q495Y8 402 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 C17orf99Q6UX52 265 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 ZNF804AQ7Z570 1209 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 CCDC146Q8IYE0 955 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.48■□□□□ 0.07
YBX3-207ENST00000539204 U2AF1L4Q8WU68 220 aaKnown RBP15.48■□□□□ 0.07
YBX3-207ENST00000539204 TEPSINQ96N21 525 aa15.48■□□□□ 0.07
YBX3-207ENST00000539204 SPDYE5A6NIY4 337 aa15.47■□□□□ 0.07
YBX3-207ENST00000539204 FARP2O94887 1054 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms