RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 EVCP57679 992 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 EXOSC10Q01780 885 aaKnown RBP7.81□□□□□ -1.16
USP28-206ENST00000538224 DNM1Q05193 864 aaKnown RBP7.81□□□□□ -1.16
USP28-206ENST00000538224 MAP3K12Q12852 859 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 MARCH10Q8NA82 808 aaPredicted RBP7.81□□□□□ -1.16
USP28-206ENST00000538224 NCOA7Q8NI08 942 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 OSBP2Q969R2 916 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 LARP6Q9BRS8 491 aaKnown RBP7.81□□□□□ -1.16
USP28-206ENST00000538224 DDX19AQ9NUU7 478 aaKnown RBP7.81□□□□□ -1.16
USP28-206ENST00000538224 TAF6LQ9Y6J9 622 aa7.81□□□□□ -1.16
USP28-206ENST00000538224 A0A0G2JS52 829 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 ESPNB1AK53 854 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 ZNF213O14771 459 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 GADD45BO75293 160 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 NTSR2O95665 410 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 GNAT2P19087 354 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 CLCN1P35523 988 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 MCAMP43121 646 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 STK3Q13188 491 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 ALX1Q15699 326 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 VPS72Q15906 364 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 FOXD4L6Q3SYB3 417 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 CCDC102BQ68D86 513 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 TMED8Q6PL24 325 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 FOXD4L3Q6VB84 417 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 STOX1Q6ZVD7 989 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 CDC37L1Q7L3B6 337 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 NSUN7Q8NE18 718 aaKnown RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 PDLIM2Q96JY6 352 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 TCEANC2Q96MN5 208 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 ZNF396Q96N95 335 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 CCDC85AQ96PX6 553 aaPredicted RBP7.8□□□□□ -1.16
USP28-206ENST00000538224 RBSNQ9H1K0 784 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 GDPD2Q9HCC8 539 aa7.8□□□□□ -1.16
USP28-206ENST00000538224 DLEC1Q9Y238 1755 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 PTPDC1A2A3K4 754 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 IGSF3O75054 1194 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 CDKL5O76039 1030 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 PDE6AP16499 860 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 MSNP26038 577 aaKnown RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 SCRN1Q12765 414 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 RESTQ13127 1097 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 SCARF1Q14162 830 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 SLC9C2Q5TAH2 1124 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 RC3H1Q5TC82 1133 aaKnown RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 SUSD4Q5VX71 490 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 CPLX2Q6PUV4 134 aaKnown RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 MB21D2Q8IYB1 491 aaPredicted RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 SPATA5Q8NB90 893 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 AIDAQ96BJ3 306 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 ACSBG1Q96GR2 724 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 TMEM87BQ96K49 555 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 SPATA32Q96LK8 384 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 NYXQ9GZU5 481 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 CNNM2Q9H8M5 875 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 GNL3LQ9NVN8 582 aaKnown RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 CCDC39Q9UFE4 941 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 NSFL1CQ9UNZ2 370 aaKnown RBP7.79□□□□□ -1.16
USP28-206ENST00000538224 NIP7Q9Y221 180 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP28-206ENST00000538224 BCL9LQ86UU0 1499 aa7.79□□□□□ -1.16
USP28-206ENST00000538224 SPATA31A6Q5VVP1 1343 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 SALL1Q9NSC2 1324 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 MYH6P13533 1939 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 NUTM2BA6NNL0 878 aaPredicted RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 NUTM2EB1AL46 878 aaPredicted RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 PRC1O43663 620 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 IDH1O75874 414 aaKnown RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 CAVIN2O95810 425 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 FGAP02671 866 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 CCDC192P0DO97 292 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 PHKA1P46020 1223 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 APOBRQ0VD83 1088 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 ITPK1Q13572 414 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 MAP3K11Q16584 847 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 TTC6Q86TZ1 520 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 ZSCAN30Q86W11 494 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 NUTM2AQ8IVF1 878 aaPredicted RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 LEO1Q8WVC0 666 aaPredicted RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 MTA3Q9BTC8 594 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 NACAP1Q9BZK3 213 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 PUS7LQ9H0K6 701 aaKnown RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 NUP62CLQ9H1M0 184 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 RTN4Q9NQC3 1192 aaKnown RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 PDS5AQ29RF7 1337 aaKnown RBP7.78□□□□□ -1.16
USP28-206ENST00000538224 PNPLA7Q6ZV29 1317 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 ZNF532Q9HCE3 1301 aa7.78□□□□□ -1.16
USP28-206ENST00000538224 NID2Q14112 1375 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 GOLGA8BA8MQT2 603 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 CPLX1O14810 134 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 SEMA3EO15041 775 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 ZBTB22O15209 634 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 CTAGE5O15320 804 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 JAK2O60674 1132 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 CHGBP05060 677 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 HCLS1P14317 486 aaPredicted RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 HMGB2P26583 209 aaKnown RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 PDIA3P30101 505 aaKnown RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 UBE4AQ14139 1066 aa7.77□□□□□ -1.17
USP28-206ENST00000538224 SF3B3Q15393 1217 aaKnown RBP7.77□□□□□ -1.17
USP28-206ENST00000538224 BRAPQ7Z569 592 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms