RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 RNF20Q5VTR2 975 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 FOXD4L5Q5VV16 416 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-210ENST00000538120 FOXD4L4Q8WXT5 416 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-210ENST00000538120 ZNF831Q5JPB2 1677 aa12.8□□□□□ -0.36
CLIP1-210ENST00000538120 PDE8BO95263 885 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 FKBP4Q02790 459 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLIP1-210ENST00000538120 GLIPR1L2Q4G1C9 344 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 GORABQ5T7V8 394 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 GPT2Q8TD30 523 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 ALDH8A1Q9H2A2 487 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-210ENST00000538120 NIP7Q9Y221 180 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLIP1-210ENST00000538120 MYH3P11055 1940 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 SPEF2Q9C093 1822 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 A0A0U1RQG5 324 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-210ENST00000538120 RPS6KB1P23443 525 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 ZAP70P43403 619 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 PI16Q6UXB8 463 aa12.79□□□□□ -0.36
CLIP1-210ENST00000538120 NSFL1CQ9UNZ2 370 aaKnown RBP12.79□□□□□ -0.36
CLIP1-210ENST00000538120 MAST3O60307 1309 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 THSD7AQ9UPZ6 1657 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 CYP21A2P08686 494 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 FGFR2P21802 821 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 ME3Q16798 604 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 ANP32BQ92688 251 aaKnown RBP12.78□□□□□ -0.36
CLIP1-210ENST00000538120 OSBP2Q969R2 916 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 ZSCAN31Q96LW9 406 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-210ENST00000538120 DCBLD2Q96PD2 775 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 SEC31BQ9NQW1 1179 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 TPCN1Q9ULQ1 816 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 ABCC12Q96J65 1359 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 M0R2C6 588 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 BLOC1S2Q6QNY1 142 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 SMIM5Q71RC9 77 aa12.78□□□□□ -0.36
CLIP1-210ENST00000538120 ZNF512BQ96KM6 892 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-210ENST00000538120 MCAMP43121 646 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 RBM10P98175 930 aaKnown RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 TOB2Q14106 344 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 FAM182BQ5T319 152 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 TCEANC2Q96MN5 208 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 DSCC1Q9BVC3 393 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 CNTNAP4Q9C0A0 1308 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 HSPD1P10809 573 aaKnown RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 MSNP26038 577 aaKnown RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 CLEC4GQ6UXB4 293 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 STOX1Q6ZVD7 989 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 CCDC83Q8IWF9 413 aa12.77□□□□□ -0.37
CLIP1-210ENST00000538120 HELBQ8NG08 1087 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 SH2B1Q9NRF2 756 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-210ENST00000538120 DDX60Q8IY21 1712 aaKnown RBP12.76□□□□□ -0.37
CLIP1-210ENST00000538120 A0A0G2JLW4 131 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 KRT32Q14532 448 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 BCL2L12Q9HB09 334 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.76□□□□□ -0.37
CLIP1-210ENST00000538120 MROH5Q6ZUA9 1318 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 RTL9Q8NET4 1388 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 FOXP2O15409 715 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 DTNBO60941 627 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 NECAB1Q8N987 351 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 NEK1Q96PY6 1258 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 TMEM63CQ9P1W3 806 aa12.76□□□□□ -0.37
CLIP1-210ENST00000538120 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-210ENST00000538120 SNAP23O00161 211 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 OFD1O75665 1012 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 TPM2P07951 284 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 PHKA1P46020 1223 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 CCDC102BQ68D86 513 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 CERKQ8TCT0 537 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 ZNF652Q9Y2D9 606 aa12.75□□□□□ -0.37
CLIP1-210ENST00000538120 ARID4AP29374 1257 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 CCDC152Q4G0S7 254 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 RC3H1Q5TC82 1133 aaKnown RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 C3orf67Q6ZVT6 689 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 LPIN2Q92539 896 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 GJD4Q96KN9 370 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 MFRPQ9BY79 579 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 ZMYND15Q9H091 742 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 SMC3Q9UQE7 1217 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 COL4A1P02462 1669 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 WDR33Q9C0J8 1336 aaKnown RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 SYCE3A1L190 88 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 ZFYP08048 801 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 ANKRD1Q15327 319 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 PIH1D3Q9NQM4 214 aaKnown RBP12.74□□□□□ -0.37
CLIP1-210ENST00000538120 AKAP11Q9UKA4 1901 aa12.74□□□□□ -0.37
CLIP1-210ENST00000538120 SYT1P21579 422 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 GJB2P29033 226 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 HSPA1LP34931 641 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 ERFEQ4G0M1 354 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 PDLIM2Q96JY6 352 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 PUS7LQ9H0K6 701 aaKnown RBP12.73□□□□□ -0.37
CLIP1-210ENST00000538120 BTAF1O14981 1849 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 ONECUT3O60422 494 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-210ENST00000538120 RPS6KA4O75676 772 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 AMIGO3Q86WK7 504 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 APPBP2Q92624 585 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 NHSQ6T4R5 1651 aa12.73□□□□□ -0.37
CLIP1-210ENST00000538120 LAMB2P55268 1798 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms