RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 NBPF4Q96M43 638 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 PARD6BQ9BYG5 372 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 TAOK2Q9UL54 1235 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 HDAC5Q9UQL6 1122 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 CARMIL3Q8ND23 1372 aa17.28■□□□□ 0.36
SYNE1-236ENST00000537750 ATP5JP18859 108 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 TNNT3P45378 269 aaPredicted RBP17.27■□□□□ 0.36
SYNE1-236ENST00000537750 GNG11P61952 73 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 GPS2Q13227 327 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 SPTLC2O15270 562 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 CCP110O43303 1012 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 LMAN1P49257 510 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 EXOSC10Q01780 885 aaKnown RBP17.27■□□□□ 0.36
SYNE1-236ENST00000537750 C14orf37Q86TY3 774 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 DBNDD2Q9BQY9 259 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 PPP2R2CQ9Y2T4 447 aa17.27■□□□□ 0.36
SYNE1-236ENST00000537750 MYO1CO00159 1063 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 IGKV5-2P06315 115 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 RAB11FIP4Q86YS3 637 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 PTPRUQ92729 1446 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 FUT8Q9BYC5 575 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 ZSWIM4Q9H7M6 989 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 ARFGAP3Q9NP61 516 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 ADAM21Q9UKJ8 722 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 MYH15Q9Y2K3 1946 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 H3BQF6 201 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 ATP8B1O43520 1251 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 TPM1P09493 284 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 MARCKSP29966 332 aaPredicted RBP17.26■□□□□ 0.35
SYNE1-236ENST00000537750 PSME1Q06323 249 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 RASSF4Q9H2L5 321 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 PFKFB1P16118 471 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 CASQ1P31415 396 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 PPP2R3AQ06190 1150 aa17.26■□□□□ 0.35
SYNE1-236ENST00000537750 GPR161Q8N6U8 529 aaKnown RBP17.26■□□□□ 0.35
SYNE1-236ENST00000537750 MAP3K9P80192 1104 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 TNNI3KQ59H18 835 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 ZNF530Q6P9A1 599 aaPredicted RBP17.25■□□□□ 0.35
SYNE1-236ENST00000537750 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 ABTB2Q8N961 1025 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 FPGT-TNNI3KV9GXZ4 949 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 ADAMTS13Q76LX8 1427 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 E7EWF7 191 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 HMGB1P09429 215 aaKnown RBP17.25■□□□□ 0.35
SYNE1-236ENST00000537750 TOP1P11387 765 aaKnown RBP17.25■□□□□ 0.35
SYNE1-236ENST00000537750 TMEM139Q8IV31 216 aa17.25■□□□□ 0.35
SYNE1-236ENST00000537750 KCNG4Q8TDN1 519 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 IKBKBO14920 756 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 ZSCAN12O43309 604 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 WDHD1O75717 1129 aaPredicted RBP17.24■□□□□ 0.35
SYNE1-236ENST00000537750 RSRC2Q7L4I2 434 aaKnown RBP17.24■□□□□ 0.35
SYNE1-236ENST00000537750 VSTM4Q8IW00 320 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 PDILTQ8N807 584 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 ABCC6O95255 1503 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 AGLP35573 1532 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 MROH7-TTC4A0A0A0MT08 1334 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 UTYO14607 1347 aa17.24■□□□□ 0.35
SYNE1-236ENST00000537750 AXDND1Q5T1B0 1012 aaPredicted RBP17.23■□□□□ 0.35
SYNE1-236ENST00000537750 TOGARAM2Q6ZUX3 1019 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 RIC3Q7Z5B4 369 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 DHX58Q96C10 678 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 MPHOSPH8Q99549 860 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 AGXT2Q9BYV1 514 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 FANCLQ9NW38 375 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 MRFAP1Q9Y605 127 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 SETD1BQ9UPS6 1966 aaKnown RBP17.23■□□□□ 0.35
SYNE1-236ENST00000537750 KIF28PB7ZC32 967 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 LTKP29376 864 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 DHX8Q14562 1220 aaKnown RBP17.23■□□□□ 0.35
SYNE1-236ENST00000537750 LONRF2Q1L5Z9 754 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 MYSM1Q5VVJ2 828 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 TTLL5Q6EMB2 1281 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 C8orf76Q96K31 380 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 TMEM2Q9UHN6 1383 aa17.23■□□□□ 0.35
SYNE1-236ENST00000537750 NCAPD2Q15021 1401 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 PNOCQ13519 176 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 LRRC59Q96AG4 307 aaKnown RBP17.22■□□□□ 0.35
SYNE1-236ENST00000537750 IRX2Q9BZI1 471 aaPredicted RBP17.22■□□□□ 0.35
SYNE1-236ENST00000537750 INTS13Q9NVM9 706 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 PIK3C2AO00443 1686 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 ADKP55263 362 aaKnown RBP17.22■□□□□ 0.35
SYNE1-236ENST00000537750 MYL5Q02045 173 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 KARSQ15046 597 aaKnown RBP17.22■□□□□ 0.35
SYNE1-236ENST00000537750 DESI2Q9BSY9 194 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 POLR3EQ9NVU0 708 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 YEATS4O95619 227 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 SYNE3Q6ZMZ3 975 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 FBXO18Q8NFZ0 1043 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 ZNF274Q96GC6 653 aaPredicted RBP17.22■□□□□ 0.35
SYNE1-236ENST00000537750 AK7Q96M32 723 aa17.22■□□□□ 0.35
SYNE1-236ENST00000537750 GOLIM4O00461 696 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 ARHGAP6O43182 974 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 MYL6BP14649 208 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 ESF1Q9H501 851 aaKnown RBP17.21■□□□□ 0.35
SYNE1-236ENST00000537750 CBFA2T2O43439 604 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 PTPN12Q05209 780 aaKnown RBP17.21■□□□□ 0.35
SYNE1-236ENST00000537750 MCM6Q14566 821 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 HAUS7Q99871 368 aa17.21■□□□□ 0.35
SYNE1-236ENST00000537750 BAG1Q99933 345 aaPredicted RBP17.21■□□□□ 0.35
SYNE1-236ENST00000537750 CMA1P23946 247 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms