RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 FOXO4P98177 505 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 USP17L1Q7RTZ2 530 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 IFNL1Q8IU54 200 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 CD99L2Q8TCZ2 262 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 ARMC5Q96C12 935 aa12.81□□□□□ -0.36
CLSTN3-203ENST00000534830 MANSC4A6NHS7 340 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 H0YGN5 161 aa12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 IGHMBP2P38935 993 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 EFCC1Q9HA90 598 aa12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 ANGEL1Q9UNK9 670 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 LEMD3Q9Y2U8 911 aa12.8□□□□□ -0.36
CLSTN3-203ENST00000534830 INHBEP58166 350 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 SLC4A8Q2Y0W8 1093 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 TXNRD3Q86VQ6 643 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 OGFOD1Q8N543 542 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 FBXW7Q969H0 707 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 SLC10A4Q96EP9 437 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 IRS2Q9Y4H2 1338 aa12.79□□□□□ -0.36
CLSTN3-203ENST00000534830 WNT10BO00744 389 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 EPHA10Q5JZY3 1008 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 LDLRAD1Q5T700 205 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 CHRDL2Q6WN34 429 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 OTUD5Q96G74 571 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 ANKRD2Q9GZV1 360 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 COA1Q9GZY4 146 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 FZD1Q9UP38 647 aa12.78□□□□□ -0.36
CLSTN3-203ENST00000534830 ANKRD18BA2A2Z9 1011 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 GRM8O00222 908 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 IGF2BP3O00425 579 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 ALDH1L1O75891 902 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 SASH1O94885 1247 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 MYCP01106 439 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 CHRNDQ07001 517 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 DACT2Q5SW24 774 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 C15orf52Q6ZUT6 534 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 MPHOSPH8Q99549 860 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 MXD3Q9BW11 206 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 ZNF804BA4D1E1 1349 aa12.77□□□□□ -0.37
CLSTN3-203ENST00000534830 E9PSI1 815 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 KLRK1P26718 216 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 SP3Q02447 781 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 SLFN5Q08AF3 891 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 CRHR2Q13324 411 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 SLC9C1Q4G0N8 1177 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 STRIP1Q5VSL9 837 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 OTUD7BQ6GQQ9 843 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 NBPF11Q86T75 865 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 APOBEC3FQ8IUX4 373 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 TRMT2AQ8IZ69 625 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 MRPL50Q8N5N7 158 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 KAZALD1Q96I82 304 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 WNK4Q96J92 1243 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 ZNF333Q96JL9 665 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 UTYO14607 1347 aa12.76□□□□□ -0.37
CLSTN3-203ENST00000534830 ZBTB48P10074 688 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 MMP14P50281 582 aa12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 IFIT5Q13325 482 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 LMBR1LQ6UX01 489 aa12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 CLMNQ96JQ2 1002 aa12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 SRCIN1Q9C0H9 1055 aa12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 RBM27Q9P2N5 1060 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-203ENST00000534830 SNAP23O00161 211 aa12.74□□□□□ -0.37
CLSTN3-203ENST00000534830 CAP1Q01518 475 aa12.74□□□□□ -0.37
CLSTN3-203ENST00000534830 TTLL5Q6EMB2 1281 aa12.74□□□□□ -0.37
CLSTN3-203ENST00000534830 CD209Q9NNX6 404 aa12.74□□□□□ -0.37
CLSTN3-203ENST00000534830 A0A0C4DFX4 3053 aa12.74□□□□□ -0.37
CLSTN3-203ENST00000534830 MYO3BQ8WXR4 1341 aa12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 PPP1R12BO60237 982 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 TAF5LO75529 589 aa12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 NBPF7P0C2Y1 421 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 DPF3Q92784 378 aa12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 SUCLG2Q96I99 432 aa12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 C9orf78Q9NZ63 289 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 PTCH2Q9Y6C5 1203 aa12.73□□□□□ -0.37
CLSTN3-203ENST00000534830 ECM29Q5VYK3 1845 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 PTPRCP08575 1304 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 IL1R1P14778 569 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 ARHGEF6Q15052 776 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 CCDC57Q2TAC2 916 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 SLC4A10Q6U841 1118 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 HELBQ8NG08 1087 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 SSH1Q8WYL5 1049 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 CDCA7LQ96GN5 454 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 ZBED3Q96IU2 234 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 ZNF594Q96JF6 807 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 DEFB129Q9H1M3 183 aa12.72□□□□□ -0.37
CLSTN3-203ENST00000534830 COL6A3P12111 3177 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 CCER2I3L3R5 266 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 MAP3K11Q16584 847 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 ALDH1L2Q3SY69 923 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 RABL6Q3YEC7 729 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 LDHAL6AQ6ZMR3 332 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 KIAA0825Q8IV33 1275 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 CHMP3Q9Y3E7 222 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 RIPOR2Q9Y4F9 1068 aa12.71□□□□□ -0.37
CLSTN3-203ENST00000534830 RANBP2P49792 3224 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-203ENST00000534830 GJA5P36382 358 aa12.7□□□□□ -0.38
CLSTN3-203ENST00000534830 KCNJ4P48050 445 aa12.7□□□□□ -0.38
CLSTN3-203ENST00000534830 FKBP1AP62942 108 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-203ENST00000534830 GTF2IP78347 998 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms