RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 VEZTQ9HBM0 779 aa11.57□□□□□ -0.56
USF1-210ENST00000531842 IRS2Q9Y4H2 1338 aa11.57□□□□□ -0.56
USF1-210ENST00000531842 NEURL1BA8MQ27 555 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 ITGA6P23229 1130 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 CHRNDQ07001 517 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 DLGAP5Q15398 846 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 CFAP100Q494V2 611 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 TSR2Q969E8 191 aaKnown RBP11.56□□□□□ -0.56
USF1-210ENST00000531842 ARHGAP39Q9C0H5 1083 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 EFCC1Q9HA90 598 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 CD209Q9NNX6 404 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 PTCH2Q9Y6C5 1203 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 MYO3BQ8WXR4 1341 aa11.56□□□□□ -0.56
USF1-210ENST00000531842 ALDH1A1P00352 501 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 DDX10Q13206 875 aaKnown RBP11.55□□□□□ -0.56
USF1-210ENST00000531842 RALBP1Q15311 655 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 MAP3K11Q16584 847 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 KSR2Q6VAB6 950 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 SH3TC2Q8TF17 1288 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 MYBBP1AQ9BQG0 1328 aaKnown RBP11.55□□□□□ -0.56
USF1-210ENST00000531842 ARAP2Q8WZ64 1704 aa11.55□□□□□ -0.56
USF1-210ENST00000531842 H0YGN5 161 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 H7C1W4 665 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 IGHMBP2P38935 993 aaKnown RBP11.54□□□□□ -0.56
USF1-210ENST00000531842 KCNJ4P48050 445 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 SP3Q02447 781 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 RASA3Q14644 834 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 ARMC5Q96C12 935 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 ERO1AQ96HE7 468 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 ZNF333Q96JL9 665 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 IFT57Q9NWB7 429 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 LEMD3Q9Y2U8 911 aa11.54□□□□□ -0.56
USF1-210ENST00000531842 COL1A1P02452 1464 aaPredicted RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 SPDYE2BA6NHP3 402 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 PPP1R12BO60237 982 aaPredicted RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 PLIN1O60240 522 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 DDX58O95786 925 aaKnown RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 SPDYE6P0CI01 402 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 ZBTB48P10074 688 aaPredicted RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 HSP90B1P14625 803 aaKnown RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 RBM5P52756 815 aaKnown RBP eCLIP11.53□□□□□ -0.56
USF1-210ENST00000531842 CASP7P55210 303 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 INTS3Q68E01 1043 aaKnown RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 FAM43AQ8N2R8 423 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 BRI3BPQ8WY22 251 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 OPTNQ96CV9 577 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 ZNF594Q96JF6 807 aaPredicted RBP11.53□□□□□ -0.56
USF1-210ENST00000531842 MS4A4AQ96JQ5 239 aa11.53□□□□□ -0.56
USF1-210ENST00000531842 INHBEP58166 350 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 GNAI1P63096 354 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 GRIK5Q16478 980 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 CCDC30Q5VVM6 783 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.52□□□□□ -0.57
USF1-210ENST00000531842 MPHOSPH8Q99549 860 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 TDRD3Q9H7E2 651 aaKnown RBP11.52□□□□□ -0.57
USF1-210ENST00000531842 COL6A3P12111 3177 aa11.52□□□□□ -0.57
USF1-210ENST00000531842 TCP10L2B9ZVM9 353 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 IREB2P48200 963 aaKnown RBP11.51□□□□□ -0.57
USF1-210ENST00000531842 CACNB3P54284 484 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 GCKRQ14397 625 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 TAF1CQ15572 869 aaPredicted RBP11.51□□□□□ -0.57
USF1-210ENST00000531842 SLC4A8Q2Y0W8 1093 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 MTMR14Q8NCE2 650 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 OTUD5Q96G74 571 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 TMEM39BQ9GZU3 492 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 ANKRD2Q9GZV1 360 aa11.51□□□□□ -0.57
USF1-210ENST00000531842 CCL15-CCL14A0A0B4J2E2 113 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 TESPA1A2RU30 521 aaPredicted RBP11.5□□□□□ -0.57
USF1-210ENST00000531842 CSF1RP07333 972 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 CTGFP29279 349 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 NEXNQ0ZGT2 675 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 VGLL4Q14135 290 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 MTFR1Q15390 333 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 CCL15Q16663 113 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 SLC9C1Q4G0N8 1177 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 EPHA10Q5JZY3 1008 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 CHRDL2Q6WN34 429 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 ANKRD13AQ8IZ07 590 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 TEPSINQ96N21 525 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 TMEM106CQ9BVX2 250 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 ZNF70Q9UC06 446 aaPredicted RBP11.5□□□□□ -0.57
USF1-210ENST00000531842 CHMP3Q9Y3E7 222 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 AK9Q5TCS8 1911 aa11.5□□□□□ -0.57
USF1-210ENST00000531842 SLC4A2P04920 1241 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 GYG1P46976 350 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 FOXO4P98177 505 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 SUPT20HL1Q3ZLR7 823 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 SHISA4Q96DD7 197 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 IQSEC3Q9UPP2 1182 aaPredicted RBP11.49□□□□□ -0.57
USF1-210ENST00000531842 LAMA3Q16787 3333 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 MGAMO43451 1857 aa11.49□□□□□ -0.57
USF1-210ENST00000531842 ALPK3Q96L96 1907 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 F6X3S4 739 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 IL1R1P14778 569 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 SPDYE2Q495Y8 402 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 OTUD7BQ6GQQ9 843 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 PLA2G12BQ9BX93 195 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 RBM27Q9P2N5 1060 aaKnown RBP11.48□□□□□ -0.57
USF1-210ENST00000531842 PPP2R3BQ9Y5P8 575 aa11.48□□□□□ -0.57
USF1-210ENST00000531842 A0A0C4DFX4 3053 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms