RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 A0A1W2PPZ6 126 aa8.34□□□□□ -1.07
CD44-231ENST00000531110 TRPA1O75762 1119 aa8.34□□□□□ -1.07
CD44-231ENST00000531110 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.34□□□□□ -1.07
CD44-231ENST00000531110 ADAMTSL4Q6UY14 1074 aa8.34□□□□□ -1.07
CD44-231ENST00000531110 VN1R5Q7Z5H4 357 aa8.34□□□□□ -1.07
CD44-231ENST00000531110 UBE2Q2Q8WVN8 375 aa8.34□□□□□ -1.07
CD44-231ENST00000531110 CLEC4MQ9H2X3 399 aaPredicted RBP8.34□□□□□ -1.07
CD44-231ENST00000531110 TMEM238LA0A1B0GVL6 79 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 DLL1O00548 723 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 TM4SF5O14894 197 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 DEAF1O75398 565 aaPredicted RBP8.33□□□□□ -1.08
CD44-231ENST00000531110 GNA15P30679 374 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 GRIA4P48058 902 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 IGF2-ASQ6U949 168 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 TMEM151AQ8N4L1 468 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 BCO2Q9BYV7 579 aa8.33□□□□□ -1.08
CD44-231ENST00000531110 FSCN2O14926 492 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 GDF11O95390 407 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 NRG1Q02297 640 aaPredicted RBP8.32□□□□□ -1.08
CD44-231ENST00000531110 ASAP3Q8TDY4 903 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 LENG1Q96BZ8 264 aaPredicted RBP8.32□□□□□ -1.08
CD44-231ENST00000531110 ZNF576Q9H609 170 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 SEC31BQ9NQW1 1179 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 SH2B1Q9NRF2 756 aaPredicted RBP8.32□□□□□ -1.08
CD44-231ENST00000531110 WWC3Q9ULE0 1092 aa8.32□□□□□ -1.08
CD44-231ENST00000531110 C9orf172C9J069 976 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 LINC01387J3KSC0 135 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 GSTT1P30711 240 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 ARL4DP49703 201 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 IKBKEQ14164 716 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 C12orf49Q9H741 205 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 FAM8A1Q9UBU6 413 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 PPM1HQ9ULR3 514 aa8.31□□□□□ -1.08
CD44-231ENST00000531110 APBA3O96018 575 aa8.3□□□□□ -1.08
CD44-231ENST00000531110 B3GALT4O96024 378 aa8.3□□□□□ -1.08
CD44-231ENST00000531110 ESRRAP11474 423 aaPredicted RBP8.3□□□□□ -1.08
CD44-231ENST00000531110 PI16Q6UXB8 463 aa8.3□□□□□ -1.08
CD44-231ENST00000531110 SETDB2Q96T68 719 aa8.3□□□□□ -1.08
CD44-231ENST00000531110 KRBA1A5PL33 1030 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 METTL12A8MUP2 240 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 PCDH1Q08174 1060 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 C19orf57Q0VDD7 668 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 SUZ12Q15022 739 aaKnown RBP8.29□□□□□ -1.08
CD44-231ENST00000531110 SPRED3Q2MJR0 410 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 TMEM130Q8N3G9 435 aa8.29□□□□□ -1.08
CD44-231ENST00000531110 DDX54Q8TDD1 881 aaKnown RBP8.29□□□□□ -1.08
CD44-231ENST00000531110 DUSP9Q99956 384 aaKnown RBP8.29□□□□□ -1.08
CD44-231ENST00000531110 MRPL18Q9H0U6 180 aaKnown RBP8.29□□□□□ -1.08
CD44-231ENST00000531110 CCDC9Q9Y3X0 531 aaKnown RBP8.29□□□□□ -1.08
CD44-231ENST00000531110 FAM229AH3BQW9 127 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 CD68P34810 354 aaPredicted RBP8.28□□□□□ -1.08
CD44-231ENST00000531110 DAB2P98082 770 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 ZNF326Q5BKZ1 582 aaKnown RBP8.28□□□□□ -1.08
CD44-231ENST00000531110 NXPE4Q6UWF7 544 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 TMC4Q7Z404 712 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 GALNT11Q8NCW6 608 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 C3orf58Q8NDZ4 430 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 BCL2L13Q9BXK5 485 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 OSBPL7Q9BZF2 842 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 AK5Q9Y6K8 562 aa8.28□□□□□ -1.08
CD44-231ENST00000531110 SOX1O00570 391 aaPredicted RBP8.27□□□□□ -1.09
CD44-231ENST00000531110 SELPP16109 830 aa8.27□□□□□ -1.09
CD44-231ENST00000531110 DTHD1Q6ZMT9 781 aa8.27□□□□□ -1.09
CD44-231ENST00000531110 PARP2Q9UGN5 583 aa8.27□□□□□ -1.09
CD44-231ENST00000531110 EIF4BP23588 611 aaKnown RBP8.26□□□□□ -1.09
CD44-231ENST00000531110 FCGRTP55899 365 aa8.26□□□□□ -1.09
CD44-231ENST00000531110 ADGRE1Q14246 886 aa8.26□□□□□ -1.09
CD44-231ENST00000531110 GRIK4Q16099 956 aa8.26□□□□□ -1.09
CD44-231ENST00000531110 RBM47A0AV96 593 aaKnown RBP8.25□□□□□ -1.09
CD44-231ENST00000531110 IGHA1P01876 353 aa8.25□□□□□ -1.09
CD44-231ENST00000531110 XPCQ01831 940 aaPredicted RBP8.25□□□□□ -1.09
CD44-231ENST00000531110 ZNF423Q2M1K9 1284 aa8.25□□□□□ -1.09
CD44-231ENST00000531110 PLA2G4EQ3MJ16 856 aa8.25□□□□□ -1.09
CD44-231ENST00000531110 FOXD4L6Q3SYB3 417 aaPredicted RBP8.25□□□□□ -1.09
CD44-231ENST00000531110 TXNDC11Q6PKC3 985 aa8.25□□□□□ -1.09
CD44-231ENST00000531110 FOXD4L3Q6VB84 417 aaPredicted RBP8.25□□□□□ -1.09
CD44-231ENST00000531110 KLHDC7BQ96G42 594 aa8.25□□□□□ -1.09
CD44-231ENST00000531110 PSMD2Q13200 908 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 AP3B2Q13367 1082 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 HP1BP3Q5SSJ5 553 aaPredicted RBP8.24□□□□□ -1.09
CD44-231ENST00000531110 Q6ZS46 218 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 CD163Q86VB7 1156 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 CEP44Q9C0F1 390 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 NRSN2Q9GZP1 204 aa8.24□□□□□ -1.09
CD44-231ENST00000531110 C1QTNF9BB2RNN3 333 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 CYP11A1P05108 521 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 CHRNA4P43681 627 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 PPP2R3AQ06190 1150 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 MBTPS1Q14703 1052 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.23□□□□□ -1.09
CD44-231ENST00000531110 GIPC2Q8TF65 315 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 SLC7A3Q8WY07 619 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 ANP32EQ9BTT0 268 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 CARD10Q9BWT7 1032 aa8.23□□□□□ -1.09
CD44-231ENST00000531110 SORBS3O60504 671 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 ADAM11O75078 769 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 ITGB2P05107 769 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 USP17L7P0C7H9 530 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 CDC25BP30305 580 aa8.22□□□□□ -1.09
CD44-231ENST00000531110 SHISA2Q6UWI4 295 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms