RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 COL8A1P27658 744 aa8.13□□□□□ -1.11
CD44-230ENST00000528922 HGSNATQ68CP4 663 aa8.13□□□□□ -1.11
CD44-230ENST00000528922 PPP4R2Q9NY27 417 aa8.13□□□□□ -1.11
CD44-230ENST00000528922 H3BRJ5 948 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 PIK3R2O00459 728 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 TM4SF5O14894 197 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 SETDB1Q15047 1291 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 ZNF423Q2M1K9 1284 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 SRCIN1Q9C0H9 1055 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 ZNF576Q9H609 170 aa8.12□□□□□ -1.11
CD44-230ENST00000528922 SOX1O00570 391 aaPredicted RBP8.11□□□□□ -1.11
CD44-230ENST00000528922 USP17L7P0C7H9 530 aa8.11□□□□□ -1.11
CD44-230ENST00000528922 ESRRAP11474 423 aaPredicted RBP8.11□□□□□ -1.11
CD44-230ENST00000528922 EIF4BP23588 611 aaKnown RBP8.11□□□□□ -1.11
CD44-230ENST00000528922 PTPN12Q05209 780 aaKnown RBP8.11□□□□□ -1.11
CD44-230ENST00000528922 DTHD1Q6ZMT9 781 aa8.11□□□□□ -1.11
CD44-230ENST00000528922 ZNF428Q96B54 188 aa8.11□□□□□ -1.11
CD44-230ENST00000528922 CLEC4MQ9H2X3 399 aaPredicted RBP8.11□□□□□ -1.11
CD44-230ENST00000528922 UNCXA6NJT0 531 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 FAM177BA6PVY3 158 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 FSCN2O14926 492 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 SORBS3O60504 671 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 CTSHP09668 335 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 XRCC5P13010 732 aaKnown RBP8.1□□□□□ -1.11
CD44-230ENST00000528922 GSTT1P30711 240 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 CABP4P57796 275 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 PCDH1Q08174 1060 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 FAAP100Q0VG06 881 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 TRIM28Q13263 835 aaKnown RBP8.1□□□□□ -1.11
CD44-230ENST00000528922 IKBKEQ14164 716 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 FMR1NBQ8N0W7 255 aaPredicted RBP8.1□□□□□ -1.11
CD44-230ENST00000528922 DTWD1Q8N5C7 304 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 GALNT11Q8NCW6 608 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 CARD10Q9BWT7 1032 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 NOP53Q9NZM5 478 aaKnown RBP8.1□□□□□ -1.11
CD44-230ENST00000528922 FAM8A1Q9UBU6 413 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 AKAP2Q9Y2D5 859 aa8.1□□□□□ -1.11
CD44-230ENST00000528922 SPDYE3A6NKU9 549 aa8.09□□□□□ -1.11
CD44-230ENST00000528922 RAC1P63000 192 aa8.09□□□□□ -1.11
CD44-230ENST00000528922 MRPL58Q14197 206 aaKnown RBP8.09□□□□□ -1.11
CD44-230ENST00000528922 FBXO11Q86XK2 927 aa8.09□□□□□ -1.11
CD44-230ENST00000528922 KLHDC7BQ96G42 594 aa8.09□□□□□ -1.11
CD44-230ENST00000528922 PIP4K2BP78356 416 aa8.08□□□□□ -1.12
CD44-230ENST00000528922 RPS26P11Q5JNZ5 115 aaPredicted RBP8.08□□□□□ -1.12
CD44-230ENST00000528922 SLC7A3Q8WY07 619 aa8.08□□□□□ -1.12
CD44-230ENST00000528922 DLL1O00548 723 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 B3GALT4O96024 378 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 GSK3AP49840 483 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 ZNF157P51786 506 aaPredicted RBP8.07□□□□□ -1.12
CD44-230ENST00000528922 GRIK4Q16099 956 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 FAM117BQ6P1L5 589 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 WNT8BQ93098 351 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 SRA1Q9HD15 236 aaKnown RBP8.07□□□□□ -1.12
CD44-230ENST00000528922 MRS2Q9HD23 443 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 SEC31BQ9NQW1 1179 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 VTI1BQ9UEU0 232 aa8.07□□□□□ -1.12
CD44-230ENST00000528922 PRRT3Q5FWE3 981 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 MEI1Q5TIA1 1274 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 MAP4K3Q8IVH8 894 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 ZFYVE1Q9HBF4 777 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 OSGEPQ9NPF4 335 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 KCNK4Q9NYG8 393 aa8.06□□□□□ -1.12
CD44-230ENST00000528922 KIAA1522Q9P206 1035 aaPredicted RBP8.06□□□□□ -1.12
CD44-230ENST00000528922 DDX3YO15523 660 aaKnown RBP8.05□□□□□ -1.12
CD44-230ENST00000528922 FBXO24O75426 580 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 SPATA31C1P0DKV0 1188 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 ELNP15502 786 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 C19orf57Q0VDD7 668 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 FOXD4L6Q3SYB3 417 aaPredicted RBP8.05□□□□□ -1.12
CD44-230ENST00000528922 LDLRAD1Q5T700 205 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 SHISA2Q6UWI4 295 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 FOXD4L3Q6VB84 417 aaPredicted RBP8.05□□□□□ -1.12
CD44-230ENST00000528922 KLHL23Q8NBE8 558 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 SOX17Q9H6I2 414 aaPredicted RBP8.05□□□□□ -1.12
CD44-230ENST00000528922 PPM1HQ9ULR3 514 aa8.05□□□□□ -1.12
CD44-230ENST00000528922 ADAM11O75078 769 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 SELPP16109 830 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 CD68P34810 354 aaPredicted RBP8.04□□□□□ -1.12
CD44-230ENST00000528922 GSTM4Q03013 218 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 KCNMA1Q12791 1236 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 TPTE2Q6XPS3 522 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 ANKRD24Q8TF21 1146 aa8.04□□□□□ -1.12
CD44-230ENST00000528922 MRRFQ96E11 262 aaKnown RBP8.04□□□□□ -1.12
CD44-230ENST00000528922 RNF225M0QZC1 329 aaPredicted RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 ARL4DP49703 201 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 SUZ12Q15022 739 aaKnown RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 CRELD1Q96HD1 420 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 DCAF5Q96JK2 942 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 NECAB3Q96P71 396 aaPredicted RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 TRIM56Q9BRZ2 755 aaKnown RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 GPN3Q9UHW5 284 aaPredicted RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 USP31Q70CQ4 1352 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 KRBA1A5PL33 1030 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 ENC1O14682 589 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 RBM25P49756 843 aaKnown RBP8.03□□□□□ -1.12
CD44-230ENST00000528922 NLRP12P59046 1061 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 RASSF7Q02833 373 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 IGF2-ASQ6U949 168 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 BACH2Q9BYV9 841 aa8.03□□□□□ -1.12
CD44-230ENST00000528922 NRSN2Q9GZP1 204 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms