RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 IREB2P48200 963 aaKnown RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 SLC4A8Q2Y0W8 1093 aa13.46□□□□□ -0.25
CPSF1-203ENST00000527916 JARID2Q92833 1246 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 TSR2Q969E8 191 aaKnown RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 ZBED3Q96IU2 234 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 ZNF333Q96JL9 665 aa13.46□□□□□ -0.25
CPSF1-203ENST00000527916 CLMNQ96JQ2 1002 aa13.46□□□□□ -0.25
CPSF1-203ENST00000527916 METTL22Q9BUU2 404 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-203ENST00000527916 FZD1Q9UP38 647 aa13.46□□□□□ -0.25
CPSF1-203ENST00000527916 GTF2IP78347 998 aa13.45□□□□□ -0.26
CPSF1-203ENST00000527916 TWISTNBQ3B726 338 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-203ENST00000527916 KSR2Q6VAB6 950 aa13.45□□□□□ -0.26
CPSF1-203ENST00000527916 STK31Q9BXU1 1019 aa13.45□□□□□ -0.26
CPSF1-203ENST00000527916 IGHMBP2P38935 993 aaKnown RBP13.44□□□□□ -0.26
CPSF1-203ENST00000527916 ANKRD13AQ8IZ07 590 aa13.44□□□□□ -0.26
CPSF1-203ENST00000527916 MTMR14Q8NCE2 650 aa13.44□□□□□ -0.26
CPSF1-203ENST00000527916 TTLL11Q8NHH1 800 aa13.44□□□□□ -0.26
CPSF1-203ENST00000527916 ANKRD2Q9GZV1 360 aa13.44□□□□□ -0.26
CPSF1-203ENST00000527916 ZNF804BA4D1E1 1349 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 CUL9Q8IWT3 2517 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 TESPA1A2RU30 521 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-203ENST00000527916 H0YGN5 161 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 WDHD1O75717 1129 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-203ENST00000527916 KCNJ4P48050 445 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 TXNRD3Q86VQ6 643 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 GREM2Q9H772 168 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 LAMB1P07942 1786 aa13.43□□□□□ -0.26
CPSF1-203ENST00000527916 ZNF646O15015 1829 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-203ENST00000527916 PI4KAP2A4QPH2 592 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 PI4KAP1Q8N8J0 262 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 MPHOSPH8Q99549 860 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 PTPN18Q99952 460 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 ZFYVE28Q9HCC9 887 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 MAP3K2Q9Y2U5 619 aa13.42□□□□□ -0.26
CPSF1-203ENST00000527916 FANCIQ9NVI1 1328 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 MYH3P11055 1940 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 VAMP4O75379 141 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 NEXNQ0ZGT2 675 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 OTUD5Q96G74 571 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 VEZTQ9HBM0 779 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 PTCH2Q9Y6C5 1203 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 COL6A3P12111 3177 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 SPEF2Q9C093 1822 aa13.41□□□□□ -0.26
CPSF1-203ENST00000527916 CLRN2A0PK11 232 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 USP2O75604 605 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-203ENST00000527916 IGKV5-2P06315 115 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 SPDYE6P0CI01 402 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 GJA5P36382 358 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 TNFAIP1Q13829 316 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 KIF22Q14807 665 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 TAF1CQ15572 869 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-203ENST00000527916 CFAP100Q494V2 611 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 NBPF12Q5TAG4 269 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-203ENST00000527916 OPTNQ96CV9 577 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 CD209Q9NNX6 404 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 SSC5DA1L4H1 1573 aa13.4□□□□□ -0.26
CPSF1-203ENST00000527916 ECM29Q5VYK3 1845 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 DLL1O00548 723 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 MYCP01106 439 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-203ENST00000527916 KLRK1P26718 216 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 GTF2A2P52657 109 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 RASA3Q14644 834 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 G2E3Q7L622 706 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 FAM9BQ8IZU0 186 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 SLC17A8Q8NDX2 589 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 ELP3Q9H9T3 547 aa13.39□□□□□ -0.27
CPSF1-203ENST00000527916 SALL2Q9Y467 1007 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-203ENST00000527916 F8W031 263 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-203ENST00000527916 GNRH1P01148 92 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 RBM5P52756 815 aaKnown RBP eCLIP13.38□□□□□ -0.27
CPSF1-203ENST00000527916 FKBP1AP62942 108 aaKnown RBP13.38□□□□□ -0.27
CPSF1-203ENST00000527916 CAP1Q01518 475 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 FLIIQ13045 1269 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 CERS5Q8N5B7 392 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 DPF3Q92784 378 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 MS4A4AQ96JQ5 239 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 PRMT6Q96LA8 375 aaPredicted RBP13.38□□□□□ -0.27
CPSF1-203ENST00000527916 MYH16Q9H6N6 1097 aa13.38□□□□□ -0.27
CPSF1-203ENST00000527916 CCL15-CCL14A0A0B4J2E2 113 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 NEURL1BA8MQ27 555 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 H7C1W4 665 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 ITGA6P23229 1130 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 PRMT2P55345 433 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 EXOSC9Q06265 439 aaKnown RBP13.37□□□□□ -0.27
CPSF1-203ENST00000527916 CCL15Q16663 113 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 ZNF804AQ7Z570 1209 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 BRI3BPQ8WY22 251 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 CSADQ9Y600 493 aa13.37□□□□□ -0.27
CPSF1-203ENST00000527916 CHRNDQ07001 517 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 CWF19L2Q2TBE0 894 aaKnown RBP13.36□□□□□ -0.27
CPSF1-203ENST00000527916 UBE3BQ7Z3V4 1068 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 LINS1Q8NG48 757 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 NKX2-3Q8TAU0 364 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 SH3TC2Q8TF17 1288 aa13.36□□□□□ -0.27
CPSF1-203ENST00000527916 SPINK5Q9NQ38 1064 aaPredicted RBP13.36□□□□□ -0.27
CPSF1-203ENST00000527916 RBM27Q9P2N5 1060 aaKnown RBP13.36□□□□□ -0.27
CPSF1-203ENST00000527916 PCDHAC2Q9Y5I4 1007 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms